Protein : Qrob_P0052820.2 Q. robur
Protein Identifier  ? Qrob_P0052820.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=20) 4.2.3.22 - Germacradienol synthase. Code Enzyme  EC:4.2.3.22, EC:4.2.3.75
Gene Prediction Quality  validated Protein length 

Sequence

Length: 491  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0000287 magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
GO:0010333 terpene synthase activity Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units.
GO:0016829 lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102627944 2 490 + 489 Gaps:5 89.17 554 63.77 0.0 (-)-germacrene D synthase-like
blastp_kegg lcl|pop:POPTR_0015s05270g 3 490 + 488 Gaps:11 88.27 554 65.03 0.0 hypothetical protein
blastp_kegg lcl|vvi:100232954 9 490 + 482 Gaps:11 87.07 557 64.95 0.0 (-)-germacrene D synthase (EC:4.2.3.22 4.2.3.75)
blastp_kegg lcl|pop:POPTR_0015s09710g 5 490 + 486 Gaps:11 88.07 553 65.09 0.0 POPTRDRAFT_575250 hypothetical protein
blastp_kegg lcl|vvi:100257265 10 490 + 481 Gaps:7 86.89 557 64.26 0.0 (E)-beta-caryophyllene synthase
blastp_kegg lcl|vvi:100260210 9 488 + 480 Gaps:5 87.39 555 63.09 0.0 GERA valencene synthase-like
blastp_kegg lcl|vvi:100264159 9 490 + 482 Gaps:5 87.12 559 62.83 0.0 (-)-germacrene D synthase-like
blastp_kegg lcl|cit:102614035 3 490 + 488 Gaps:22 90.68 547 63.10 0.0 (-)-germacrene D synthase-like
blastp_kegg lcl|tcc:TCM_031134 12 490 + 479 Gaps:9 85.87 566 60.49 0.0 Delta-cadinene synthase isozyme A putative
blastp_kegg lcl|vvi:100246608 9 485 + 477 Gaps:4 82.50 583 62.58 0.0 valencene synthase-like
blastp_pdb 3g4f_B 9 490 + 482 Gaps:8 87.36 554 53.51 0.0 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4f_A 9 490 + 482 Gaps:8 87.36 554 53.51 0.0 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4d_B 9 490 + 482 Gaps:8 87.36 554 53.51 0.0 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 3g4d_A 9 490 + 482 Gaps:8 87.36 554 53.51 0.0 mol:protein length:554 (+)-delta-cadinene synthase isozyme XC1
blastp_pdb 1hxa_A 8 490 + 483 Gaps:12 88.50 548 47.22 4e-152 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_pdb 1hx9_A 8 490 + 483 Gaps:12 88.50 548 47.22 4e-152 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_pdb 5eat_A 8 490 + 483 Gaps:12 88.50 548 47.42 5e-152 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_pdb 5eas_A 8 490 + 483 Gaps:12 88.50 548 47.22 2e-151 mol:protein length:548 5-EPI-ARISTOLOCHENE SYNTHASE
blastp_pdb 3m00_A 8 490 + 483 Gaps:12 88.18 550 47.22 2e-151 mol:protein length:550 Aristolochene synthase
blastp_pdb 3lz9_A 8 490 + 483 Gaps:12 88.18 550 47.22 2e-151 mol:protein length:550 Aristolochene synthase
blastp_uniprot_sprot sp|Q6Q3H3|TPSGD_VITVI 9 490 + 482 Gaps:11 87.07 557 64.95 0.0 (-)-germacrene D synthase OS Vitis vinifera GN VIT_19s0014g04930 PE 1 SV 1
blastp_uniprot_sprot sp|Q6Q3H2|TPSVS_VITVI 9 485 + 477 Gaps:4 86.51 556 60.29 0.0 Valencene synthase OS Vitis vinifera GN ValCS PE 1 SV 1
blastp_uniprot_sprot sp|B5A435|STPS1_SANAL 10 488 + 479 Gaps:8 87.12 559 59.96 0.0 Sesquiterpene synthase OS Santalum album PE 1 SV 1
blastp_uniprot_sprot sp|F6M8H7|SMST_SANMU 10 488 + 479 Gaps:8 86.65 562 58.93 0.0 Probable sesquiterpene synthase OS Santalum murrayanum GN STPS PE 3 SV 1
blastp_uniprot_sprot sp|F6M8H4|SAST_SANAL 10 488 + 479 Gaps:8 87.12 559 59.14 0.0 Probable sesquiterpene synthase OS Santalum album GN SesquiTPS1 PE 3 SV 1
blastp_uniprot_sprot sp|B9SCB6|TPS2_RICCO 9 487 + 479 Gaps:6 87.82 550 58.39 0.0 Probable terpene synthase 2 OS Ricinus communis GN TPS2 PE 3 SV 1
blastp_uniprot_sprot sp|F6M8H5|SAUST_SANAS 10 490 + 481 Gaps:8 87.01 562 58.90 0.0 Probable sesquiterpene synthase OS Santalum austrocaledonicum GN SesquiTPS PE 3 SV 1
blastp_uniprot_sprot sp|F6M8H6|SPIST_SANSP 10 488 + 479 Gaps:8 86.65 562 57.91 0.0 Probable sesquiterpene synthase OS Santalum spicatum GN SesquiTPS PE 3 SV 1
blastp_uniprot_sprot sp|E3W207|SAUSS_SANAS 10 488 + 479 Gaps:8 87.12 559 58.32 0.0 Sesquiterpene synthase OS Santalum austrocaledonicum PE 2 SV 1
blastp_uniprot_sprot sp|E3W208|SPISS_SANSP 10 488 + 479 Gaps:8 86.65 562 57.70 0.0 Sesquiterpene synthase OS Santalum spicatum PE 2 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 3 12 10 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SUPERFAMILY 168 485 318 SSF48576 none none IPR008949
SUPERFAMILY 6 168 163 SSF48239 none none IPR008930
Pfam 172 436 265 PF03936 none Terpene synthase family, metal binding domain IPR005630
Pfam 8 142 135 PF01397 none Terpene synthase, N-terminal domain IPR001906
Phobius 1 17 17 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 18 490 473 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 12 490 479 PTHR31225 none none none
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PANTHER 12 490 479 PTHR31225:SF1 none none none
Gene3D 185 488 304 G3DSA:1.10.600.10 none none IPR008949
Gene3D 8 182 175 G3DSA:1.50.30.10 none none IPR001906
Phobius 13 17 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none

1 Localization

Analysis Start End Length
SignalP_EUK 1 17 16

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 24   Secretory pathway 3 0.698 0.063 NON-PLANT 24