Protein : Qrob_P0052760.2 Q. robur

Protein Identifier  ? Qrob_P0052760.2 Organism . Name  Quercus robur
Protein Description  (M=4) 2.3.1.119 - Icosanoyl-CoA synthase. Alias (in v1)  Qrob_P0502720.1
Code Enzyme  EC:2.3.1.199, EC:2.3.1.119 Gene Prediction Quality  manual_v1
Protein length 

Sequence

Length: 494  
Kegg Orthology  K15397

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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0006633 fatty acid biosynthetic process The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
GO:0008610 lipid biosynthetic process The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_020755 10 493 + 484 Gaps:8 93.51 524 74.49 0.0 3-ketoacyl-CoA synthase
blastp_kegg lcl|pop:POPTR_0008s15990g 16 493 + 478 Gaps:5 92.50 520 74.64 0.0 POPTRDRAFT_564905 hypothetical protein
blastp_kegg lcl|sly:101258036 9 493 + 485 Gaps:8 94.61 519 73.12 0.0 3-ketoacyl-CoA synthase 11-like
blastp_kegg lcl|sly:101262858 13 493 + 481 Gaps:8 94.93 513 73.72 0.0 3-ketoacyl-CoA synthase 11-like
blastp_kegg lcl|sot:102584033 13 493 + 481 Gaps:8 93.47 521 73.72 0.0 3-ketoacyl-CoA synthase 19-like
blastp_kegg lcl|rcu:RCOM_0909590 10 493 + 484 Gaps:10 93.54 526 73.98 0.0 acyltransferase putative
blastp_kegg lcl|vvi:100263066 13 493 + 481 Gaps:8 93.47 521 74.54 0.0 3-ketoacyl-CoA synthase 11-like
blastp_kegg lcl|pxb:103940571 13 493 + 481 Gaps:9 93.67 521 72.75 0.0 3-ketoacyl-CoA synthase 19-like
blastp_kegg lcl|pvu:PHAVU_007G279500g 16 493 + 478 Gaps:5 92.68 519 73.80 0.0 hypothetical protein
blastp_kegg lcl|gmx:100785983 13 493 + 481 Gaps:8 94.20 517 73.10 0.0 3-ketoacyl-CoA synthase 11-like
blastp_pdb 3oit_B 183 467 + 285 Gaps:36 68.48 387 24.53 2e-09 mol:protein length:387 Os07g0271500 protein
blastp_pdb 3oit_A 183 467 + 285 Gaps:36 68.48 387 24.53 2e-09 mol:protein length:387 Os07g0271500 protein
blastp_uniprot_sprot sp|O48780|KCS11_ARATH 16 493 + 478 Gaps:5 94.50 509 69.65 0.0 3-ketoacyl-CoA synthase 11 OS Arabidopsis thaliana GN KCS11 PE 2 SV 1
blastp_uniprot_sprot sp|Q5XEP9|KCS17_ARATH 16 493 + 478 Gaps:10 92.42 528 68.24 0.0 3-ketoacyl-CoA synthase 17 OS Arabidopsis thaliana GN KCS17 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FG87|KCS19_ARATH 16 493 + 478 Gaps:9 92.06 529 68.58 0.0 3-ketoacyl-CoA synthase 19 OS Arabidopsis thaliana GN KCS19 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LN49|KCS4_ARATH 4 492 + 489 Gaps:6 95.16 516 59.06 0.0 3-ketoacyl-CoA synthase 4 OS Arabidopsis thaliana GN KCS4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIX1|KCS9_ARATH 5 492 + 488 Gaps:6 95.70 512 58.37 0.0 3-ketoacyl-CoA synthase 9 OS Arabidopsis thaliana GN KCS9 PE 2 SV 1
blastp_uniprot_sprot sp|Q9MAM3|KCS1_ARATH 16 492 + 477 Gaps:9 92.05 528 58.23 0.0 3-ketoacyl-CoA synthase 1 OS Arabidopsis thaliana GN KCS1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9XF43|KCS6_ARATH 16 493 + 478 Gaps:6 96.58 497 56.04 0.0 3-ketoacyl-CoA synthase 6 OS Arabidopsis thaliana GN CUT1 PE 1 SV 1
blastp_uniprot_sprot sp|O65677|KCS2_ARATH 20 492 + 473 Gaps:6 96.71 487 56.69 0.0 Probable 3-ketoacyl-CoA synthase 2 OS Arabidopsis thaliana GN KCS2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C6L5|KCS5_ARATH 16 493 + 478 Gaps:6 97.56 492 55.62 0.0 3-ketoacyl-CoA synthase 5 OS Arabidopsis thaliana GN KCS5 PE 1 SV 1
blastp_uniprot_sprot sp|Q570B4|KCS10_ARATH 16 490 + 475 Gaps:32 91.45 550 52.49 0.0 3-ketoacyl-CoA synthase 10 OS Arabidopsis thaliana GN FDH PE 1 SV 2
rpsblast_cdd gnl|CDD|165836 16 493 + 478 Gaps:5 94.13 511 71.52 0.0 PLN02192 PLN02192 3-ketoacyl-CoA synthase.
rpsblast_cdd gnl|CDD|166495 1 493 + 493 Gaps:17 97.89 521 59.80 0.0 PLN02854 PLN02854 3-ketoacyl-CoA synthase.
rpsblast_cdd gnl|CDD|166018 16 492 + 477 Gaps:6 95.42 502 59.71 0.0 PLN02377 PLN02377 3-ketoacyl-CoA synthase.
rpsblast_cdd gnl|CDD|178520 25 492 + 468 Gaps:12 99.58 478 54.20 1e-155 PLN02932 PLN02932 3-ketoacyl-CoA synthase.
rpsblast_cdd gnl|CDD|116972 80 369 + 290 none 100.00 290 65.86 1e-149 pfam08392 FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein. The members of this family are described as 3-ketoacyl-CoA synthases type III polyketide synthases fatty acid elongases and fatty acid condensing enzymes and are found in both prokaryotic and eukaryotic (mainly plant) species. The region featured in this family contains the active site residues as well as motifs involved in substrate binding.
rpsblast_cdd gnl|CDD|177808 35 492 + 458 Gaps:7 97.64 466 54.73 1e-145 PLN00415 PLN00415 3-ketoacyl-CoA synthase.
rpsblast_cdd gnl|CDD|29418 70 465 + 396 Gaps:37 100.00 361 43.21 1e-104 cd00831 CHS_like Chalcone and stilbene synthases plant-specific polyketide synthases (PKS) and related enzymes also called type III PKSs. PKS generate an array of different products dependent on the nature of the starter molecule. They share a common chemical strategy after the starter molecule is loaded onto the active site cysteine a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs using coenzyme A esters to deliver substrate to the active site but they differ in the choice of starter molecule and the number of condensation reactions..
rpsblast_cdd gnl|CDD|33230 151 467 + 317 Gaps:65 80.34 356 29.37 2e-21 COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis transport and catabolism].

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 26 26 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 83 493 411 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 61 82 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 378 468 91 SSF53901 none none IPR016039
SUPERFAMILY 273 350 78 SSF53901 none none IPR016039
PANTHER 16 493 478 PTHR31561 "KEGG:00062+2.3.1.199","MetaCyc:PWY-5080","MetaCyc:PWY-5972","MetaCyc:PWY-6433","MetaCyc:PWY-6598","MetaCyc:PWY-7036","MetaCyc:PWY-7601","MetaCyc:PWY-7602","MetaCyc:PWY-7619","UniPathway:UPA00094";signature_desc=FAMILY NOT NAMED none IPR012392
Phobius 50 60 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 75 291 217 SSF53901 none none IPR016039
Phobius 27 49 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 386 465 80 PF08541 "KEGG:00061+2.3.1.180","MetaCyc:PWY-4381","UniPathway:UPA00094" 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IPR013747
Pfam 82 368 287 PF08392 "KEGG:00062+2.3.1.199","MetaCyc:PWY-5080","MetaCyc:PWY-5972","MetaCyc:PWY-6433","MetaCyc:PWY-6598","MetaCyc:PWY-7036","MetaCyc:PWY-7601","MetaCyc:PWY-7602","MetaCyc:PWY-7619","UniPathway:UPA00094" FAE1/Type III polyketide synthase-like protein IPR013601
PIRSF 13 493 481 PIRSF036417 "KEGG:00062+2.3.1.199","MetaCyc:PWY-5080","MetaCyc:PWY-5972","MetaCyc:PWY-6433","MetaCyc:PWY-6598","MetaCyc:PWY-7036","MetaCyc:PWY-7601","MetaCyc:PWY-7602","MetaCyc:PWY-7619","UniPathway:UPA00094" none IPR012392
Gene3D 296 469 174 G3DSA:3.40.47.10 none none IPR016038
PANTHER 16 493 478 PTHR31561:SF3 none none none
Gene3D 84 286 203 G3DSA:3.40.47.10 none none IPR016038

2 Localization

Analysis Start End Length
TMHMM 61 83 22
TMHMM 27 49 22

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting