Protein : Qrob_P0010290.2 Q. robur
Protein Identifier  ? Qrob_P0010290.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=4) K02690 - photosystem I P700 chlorophyll a apoprotein A2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 297  
Kegg Orthology  K02690
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0009522 photosystem I A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0009579 thylakoid A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|atr:AmtrCp021 127 296 + 170 Gaps:8 23.71 734 72.41 3e-69 psaB PSI P700 apoprotein A2
blastp_kegg lcl|rcu:RCOM_ORF00036 127 296 + 170 Gaps:8 23.71 734 71.84 4e-69 psaB photosystem I P700 chlorophyll a
blastp_kegg lcl|vvi:4025090 127 296 + 170 Gaps:8 23.71 734 72.41 6e-69 psaB ViviCp020 photosystem I P700 chlorophyll a apoprotein A2
blastp_kegg lcl|gmx:3989267 127 296 + 170 Gaps:4 23.71 734 71.26 1e-68 psaB GlmaCp012 photosystem I P700 chlorophyll a apoprotein A2
blastp_kegg lcl|pvu:PhvuCp15 127 296 + 170 Gaps:6 23.71 734 71.84 1e-68 psaB photosystem I P700 chlorophyll a apoprotein A2
blastp_kegg lcl|cit:4271130 127 296 + 170 Gaps:8 23.71 734 72.41 1e-68 psaB CisiCp020 photosystem I P700 chlorophyll a apoprotein A2
blastp_kegg lcl|pda:8890506 127 296 + 170 Gaps:8 23.71 734 71.84 1e-68 psaB PhdaC_p020 photosystem I P700 chlorophyll A apoprotein A2
blastp_kegg lcl|pmum:18668024 127 296 + 170 Gaps:4 23.71 734 70.69 2e-68 psaB CP95_p068 photosystem I P700 apoprotein A2
blastp_kegg lcl|pper:PrpeC_p020 127 296 + 170 Gaps:4 23.71 734 70.69 2e-68 psaB photosystem I P700 apoprotein A2
blastp_kegg lcl|sbi:SobiCp021 127 296 + 170 Gaps:8 23.71 734 71.26 3e-68 psaB photosystem I P700 chlorophyll a apoprotein A2
blastp_pdb 2o01_B 127 296 + 170 Gaps:8 23.77 732 66.67 6e-65 mol:protein length:732 Photosystem I P700 chlorophyll a apoprotein A
blastp_pdb 2wsf_B 127 296 + 170 Gaps:8 23.71 734 66.67 7e-65 mol:protein length:734 PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A
blastp_pdb 2wse_B 127 296 + 170 Gaps:8 23.71 734 66.67 7e-65 mol:protein length:734 PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A
blastp_pdb 2wsc_B 127 296 + 170 Gaps:8 23.71 734 66.67 7e-65 mol:protein length:734 PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A
blastp_pdb 3lw5_B 127 296 + 170 Gaps:8 23.74 733 66.67 7e-65 mol:protein length:733 Photosystem I P700 chlorophyll a apoprotein A
blastp_pdb 3pcq_B 127 296 + 170 Gaps:10 24.05 740 54.49 4e-53 mol:protein length:740 Photosystem I P700 chlorophyll a apoprotein A
blastp_pdb 1jb0_B 127 296 + 170 Gaps:10 24.05 740 54.49 4e-53 mol:protein length:740 PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A
blastp_pdb 2wsf_A 136 296 + 161 Gaps:16 21.24 758 42.86 6e-24 mol:protein length:758 PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A
blastp_pdb 2wse_A 136 296 + 161 Gaps:16 21.24 758 42.86 6e-24 mol:protein length:758 PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A
blastp_pdb 2wsc_A 136 296 + 161 Gaps:16 21.24 758 42.86 6e-24 mol:protein length:758 PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A
blastp_uniprot_sprot sp|Q06GR1|PSAB_PIPCE 127 296 + 170 Gaps:8 23.71 734 72.99 1e-71 Photosystem I P700 chlorophyll a apoprotein A2 OS Piper cenocladum GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|Q49KZ9|PSAB_EUCGG 127 296 + 170 Gaps:8 23.71 734 73.56 3e-71 Photosystem I P700 chlorophyll a apoprotein A2 OS Eucalyptus globulus subsp. globulus GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|Q09G47|PSAB_PLAOC 127 296 + 170 Gaps:8 23.71 734 72.41 4e-71 Photosystem I P700 chlorophyll a apoprotein A2 OS Platanus occidentalis GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|Q0G9M0|PSAB_LIRTU 127 296 + 170 Gaps:8 23.71 734 72.99 4e-71 Photosystem I P700 chlorophyll a apoprotein A2 OS Liriodendron tulipifera GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|Q09FW2|PSAB_NANDO 127 296 + 170 Gaps:8 23.71 734 72.41 6e-71 Photosystem I P700 chlorophyll a apoprotein A2 OS Nandina domestica GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|Q06GZ8|PSAB_DRIGR 127 296 + 170 Gaps:8 23.71 734 72.41 7e-71 Photosystem I P700 chlorophyll a apoprotein A2 OS Drimys granadensis GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|Q70Y04|PSAB_AMBTC 127 296 + 170 Gaps:8 23.71 734 72.41 1e-70 Photosystem I P700 chlorophyll a apoprotein A2 OS Amborella trichopoda GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|P58385|PSAB_LOTJA 127 296 + 170 Gaps:8 23.71 734 72.41 2e-70 Photosystem I P700 chlorophyll a apoprotein A2 OS Lotus japonicus GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|A6MM35|PSAB_BUXMI 127 296 + 170 Gaps:8 23.71 734 72.41 2e-70 Photosystem I P700 chlorophyll a apoprotein A2 OS Buxus microphylla GN psaB PE 3 SV 1
blastp_uniprot_sprot sp|Q9MTN7|PSAB_OENEH 127 296 + 170 Gaps:4 23.71 734 70.69 2e-70 Photosystem I P700 chlorophyll a apoprotein A2 OS Oenothera elata subsp. hookeri GN psaB PE 3 SV 2

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 127 296 170 G3DSA:1.20.1130.10 "MetaCyc:PWY-101","MetaCyc:PWY-6785" none IPR001280
Gene3D 5 126 122 G3DSA:3.40.50.720 none none IPR016040
PRINTS 215 233 19 PR00257 "MetaCyc:PWY-101","MetaCyc:PWY-6785" Plant photosystem I psaA and psaB protein signature IPR001280
PRINTS 272 295 24 PR00257 "MetaCyc:PWY-101","MetaCyc:PWY-6785" Plant photosystem I psaA and psaB protein signature IPR001280
PRINTS 121 145 25 PR00257 "MetaCyc:PWY-101","MetaCyc:PWY-6785" Plant photosystem I psaA and psaB protein signature IPR001280
Pfam 125 296 172 PF00223 "MetaCyc:PWY-101","MetaCyc:PWY-6785" Photosystem I psaA/psaB protein IPR001280
Phobius 1 271 271 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 125 296 172 SSF81558 "MetaCyc:PWY-101","MetaCyc:PWY-6785" none IPR001280
PANTHER 127 289 163 PTHR30128:SF5 none none none
Phobius 272 291 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 127 289 163 PTHR30128 none none none
Phobius 292 296 5 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

1 Localization

Analysis Start End Length
TMHMM 272 291 19

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting