2 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0003677 | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
| GO:0046983 | protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
13 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|rcu:RCOM_1510870 | 1 | 157 | + | 157 | Gaps:4 | 93.06 | 173 | 63.98 | 3e-67 | DNA binding protein putative |
| blastp_kegg | lcl|cic:CICLE_v10022480mg | 6 | 157 | + | 152 | Gaps:4 | 86.19 | 181 | 67.95 | 5e-66 | hypothetical protein |
| blastp_kegg | lcl|pop:POPTR_0015s08580g | 5 | 157 | + | 153 | Gaps:1 | 86.52 | 178 | 62.99 | 2e-64 | POPTRDRAFT_575141 hypothetical protein |
| blastp_kegg | lcl|cit:102614927 | 6 | 157 | + | 152 | Gaps:4 | 86.19 | 181 | 66.67 | 2e-64 | uncharacterized LOC102614927 |
| blastp_kegg | lcl|vvi:100253569 | 11 | 157 | + | 147 | Gaps:1 | 83.15 | 178 | 66.22 | 4e-64 | uncharacterized LOC100253569 |
| blastp_kegg | lcl|pop:POPTR_0012s08050g | 6 | 157 | + | 152 | Gaps:2 | 86.03 | 179 | 59.74 | 3e-61 | POPTRDRAFT_773000 hypothetical protein |
| blastp_kegg | lcl|mdm:103455312 | 1 | 157 | + | 157 | Gaps:10 | 89.30 | 187 | 59.88 | 4e-61 | uncharacterized LOC103455312 |
| blastp_kegg | lcl|gmx:100811485 | 4 | 157 | + | 154 | Gaps:2 | 81.68 | 191 | 58.33 | 3e-59 | uncharacterized LOC100811485 |
| blastp_kegg | lcl|pmum:103338332 | 1 | 160 | + | 160 | Gaps:12 | 90.91 | 187 | 58.82 | 6e-59 | uncharacterized LOC103338332 |
| blastp_kegg | lcl|pper:PRUPE_ppa020940mg | 1 | 157 | + | 157 | Gaps:8 | 88.71 | 186 | 58.79 | 3e-58 | hypothetical protein |
| blastp_uniprot_sprot | sp|Q9STJ7|BH118_ARATH | 11 | 160 | + | 150 | Gaps:13 | 88.96 | 163 | 34.48 | 1e-10 | Transcription factor bHLH118 OS Arabidopsis thaliana GN BHLH118 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q9FLI1|BH036_ARATH | 11 | 160 | + | 150 | Gaps:17 | 89.08 | 174 | 28.39 | 1e-08 | Transcription factor bHLH36 OS Arabidopsis thaliana GN BHLH36 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q9STJ6|BH126_ARATH | 17 | 160 | + | 144 | Gaps:30 | 67.87 | 221 | 26.00 | 9e-06 | Transcription factor bHLH126 OS Arabidopsis thaliana GN BHLH126 PE 2 SV 1 |
12 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| ProSiteProfiles | 9 | 64 | 56 | PS50888 | none | Myc-type, basic helix-loop-helix (bHLH) domain profile. | IPR011598 |
| Phobius | 1 | 26 | 26 | SIGNAL_PEPTIDE_N_REGION | none | N-terminal region of a signal peptide. | none |
| Coils | 61 | 82 | 22 | Coil | none | none | none |
| Gene3D | 13 | 77 | 65 | G3DSA:4.10.280.10 | none | none | IPR011598 |
| Phobius | 1 | 43 | 43 | SIGNAL_PEPTIDE | none | Signal peptide region | none |
| Pfam | 14 | 64 | 51 | PF00010 | none | Helix-loop-helix DNA-binding domain | IPR011598 |
| Phobius | 27 | 38 | 12 | SIGNAL_PEPTIDE_H_REGION | none | Hydrophobic region of a signal peptide. | none |
| SUPERFAMILY | 12 | 77 | 66 | SSF47459 | none | none | IPR011598 |
| Phobius | 44 | 160 | 117 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
| PANTHER | 6 | 160 | 155 | PTHR13935:SF46 | none | none | none |
| Phobius | 39 | 43 | 5 | SIGNAL_PEPTIDE_C_REGION | none | C-terminal region of a signal peptide. | none |
| PANTHER | 6 | 160 | 155 | PTHR13935 | none | none | IPR015660 |
17 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Champenoux_2015_nPriLBD_3P | Qrob_Chr10 | 10 | v_15000_157 | v_15000_310 | 15,68 | 15,9 | 15,91 | lod | 2.4 | 5.5 |
| Bourran2_2014_nSecLBD_3P | Qrob_Chr08 | 8 | s_1BN2OD_551 | s_1B5AYF_599 | 17,17 | 0 | 43,51 | lod | 1,9229 | 4,4 |
| Bourran2_2014_nLBD*_3P | Qrob_Chr08 | 8 | v_5216_549 | v_11837_70 | 12,25 | 0 | 35,55 | lod | 2,5951 | 6 |
| Bourran2_2014_nP*_3P | Qrob_Chr08 | 8 | v_5216_549 | v_11837_70 | 12,19 | 0 | 31,97 | lod | 2,8472 | 6 |
| Bourran2_2002_QTL11_peak_Bud_burst_A4 | Qrob_Chr06 | 6 | s_1C41PA_791 | s_1AM1AV_1141 | 19,17 | 0 | 34,57 | lod | 2,3 | 2,9 |
| Bourran2_2014_aSeqBC_3P | Qrob_Chr06 | 6 | v_506_189 | v_686_77 | 30,72 | 13,58 | 43,48 | lod | 2,2746 | 6,3 |
| Bourran2_2014_aSeqBC*_A4 | Qrob_Chr06 | 6 | s_2F5MK3_712 | v_444_355 | 27,13 | 14,86 | 39,46 | lod | 3,7847 | 9,8 |
| Bourran2_2014_nEpis*_3P | Qrob_Chr08 | 8 | s_1DA4QW_688 | s_1DNI7D_820 | 17,96 | 0 | 37,75 | lod | 2,9745 | 7,5 |
| Bourran2_2014_nEpis*_A4 | Qrob_Chr07 | 7 | v_12400_446 | s_1BPEBU_1211 | 6,93 | 0 | 15,13 | lod | 4,7411 | 11 |
| Bourran2_2014_nFork*_3P | Qrob_Chr06 | 6 | v_12930_125 | s_1AMZEI_909 | 34,28 | 7,43 | 41,48 | lod | 2,4044 | 5,5 |
| Bourran2_2014_nLBD_A4 | Qrob_Chr06 | 6 | v_12930_125 | s_1AMZEI_909 | 37,41 | 9,8 | 50,1 | lod | 1,9524 | 4,1 |
| Bourran2_2014_nPriBD_A4 | Qrob_Chr06 | 6 | v_12930_125 | s_1AMZEI_909 | 34,51 | 3,36 | 51,86 | lod | 1,6747 | 3,9 |
| Bourran2_2014_nPriLBD*_3P | Qrob_Chr11 | 11 | v_12066_307 | s_1B15GJ_447 | 3,37 | 0,57 | 16,17 | lod | 3,4299 | 6,9 |
| Bourran2_2014_nSecLBD_A4 | Qrob_Chr07 | 7 | v_8327_222 | s_1A4WGY_363 | 16,04 | 0 | 44,69 | lod | 2,6373 | 6,5 |
| Bourran2_2014_vEpiBC_A4 | Qrob_Chr06 | 6 | v_12930_125 | s_1AMZEI_909 | 37,55 | 14,41 | 50,01 | lod | 1,7882 | 4,8 |
| Champenoux_2015_nEpis_3P | Qrob_Chr11 | 11 | s_1DG9PM_867 | s_1BZ083_1312 | 26,53 | 25,47 | 27,72 | lod | 4.4 | 8.9 |
| Champenoux_2015_nP_3P | Qrob_Chr06 | 6 | s_1A386O_228 | s_1AYZFS_603 | 27,03 | 26,47 | 27,34 | lod | 2.8 | 7.2 |
