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Platform

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Services

The URGI plant bioinformatics facility proposes services related to:

  • genomic annotation of Transposable Elements (TE), using a dedicated  Virtual Research Environment (VRE) based on REPET suite
  • data integration into the URGI information System GnpIS, data federation, training & guidelines of FAIR data management

Services description in a nutshell:

  • Genomics Annotation - See dedicated page: Service
    • Expertised annotation of transposable elements, via out REPET pipeline.
    • Virtual Research Environment specialized into TE annotation
  • Data & Federation management - See dedicated page: Service
    • Data integration into our Information System GnpIS
    • Data federation portal in the frame of the international Wheat Initiative (WheatIS), the ELIXIR Plant Science Community (FAIDARE), and french Biologicial Resource Centers (RARe) communities.
    • Training & Guidelines for FAIR data management

All our services rely on the URGI IT infrastructure described in: Computer hardware

Applications to services are evaluated about once a month.

Update: 15 Sep 2025
Creation date: 25 Feb 2015