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Tools

Tools are in free access Public access or restricted access Registered access

They run on the web, unix or both.

Tools in restricted access can use unpublished data.


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R

Free software environment for statistical computing and graphics
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A package for automated de novo identification of repeat families from genomic sequences
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 The REPET package (Flutre T. et al, 2011, Quesneville H. et al. 2005) integrates bioinformatics programs in order to tackle biological issues at the genomic scale. It is distributed under the CeCILL license and deposited to the ...

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Multi-format sequence reader, reverse complement
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Identification of regulators of reproductive development and agronomic performances by inter-species promoter sequences analysis.
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It screens DNA sequences for interspersed repeats and low complexity DNA sequences. The output of the program is a detailed annotation of the repeats that are present in the query sequence as well as a modified version of the query sequence in which all ...

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RepeatScout is a tool to discover repetitive substrings in DNA
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Update: 02 Dec 2011
Creation date: 31 May 2011