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Tools

Tools are in free access Public access or restricted access Registered access

They run on the web, unix or both.

Tools in restricted access can use unpublished data.


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Jalview is a multiple alignment editor written in Java. It is used widely in a variety of web pages (e.g. the EBI Clustalw server and the Pfam protein domain database) but is available as a general purpose alignment editor and analysis ...

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Jellyfish mer counter
What is it?
Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can ...

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JIRA is a project tracking tool for teams building great software.JIRA sits at the center of your development team, connecting the team and the work being done. Track bugs and defects, link issues to related source code, plan agile development, monitor activity, report on ...

Update: 02 Dec 2011
Creation date: 31 May 2011