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Tools

Tools are in free access Public access or restricted access Registered access

They run on the web, unix or both.

Tools in restricted access can use unpublished data.


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EMBOSS is "The European Molecular Biology Open Software Suite". EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically copes with data in a variety of formats and even ...

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EMMA is a statistical test for model organisms association mapping correcting for the confounding from population structure and genetic relatedness. EMMA takes advantage of the specific nature of the optimization problem in applying mixed models for association mapping, which allows us to sustantially ...

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Efficient Mixed-Model Association eXpedited (EMMAX) is a statistical test for large scale human or model organism association mapping accounting for the sample structure. In addition to the computational efficiency obtained by EMMA algorithm, EMMAX takes advantage of the fact that each loci explains only ...

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This tool is based on genscan, which uses a Hidden Markov Model (HMM) to do gene prediction in DNA sequences.
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Produce colinear segments from extant genomes handling rearrangements
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Pairwise sequence comparison.It includes a good model for gap alignment, especially EST to genome mapping.
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Electronic PCR (e-PCR) is computational procedure that is used to identify sequence tagged sites( STSs), within DNA sequences.
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Update: 02 Dec 2011
Creation date: 31 May 2011