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DEA is a Galaxy workflow for the Differential Expression Analysis of RNA-Seq data between two conditions. It uses a bioinformatics protocol based on raw read counts from a mapping of the reads to the reference genome.DEA is composed of a RNA-Seq mapper (Tophat, Tophat2 ...

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Differential gene expression analysis based on the negative binomial distribution
Bioconductor version: Release (3.2)Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution.Author: Michael Love (HSPH Boston), Simon Anders, Wolfgang Huber ...


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DSK is a k-mer counting software, similar to Jellyfish. Jellyfish is very fast but limited to large-memory servers and k ≤ 32. In contrast, DSK supports large values of k, and runs with (almost-)arbitrarily low memory usage and reasonably low temporary disk usage. ...

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Amino acid translation program for full-length cDNA sequences with frameshift errors

Update: 02 Dec 2011
Creation date: 31 May 2011