FEEDBACK  |  CONTACT  |  SITE MAP  |  ABOUT US   
Ask an account
You are here : Home / Home URGI / Tools

Tools

Tools are in free access Public access or restricted access Registered access

They run on the web, unix or both.

Tools in restricted access can use unpublished data.


ALL / A / B / C / D / E / F / G / H / I / J / K / L / M / N / O / P / Q / R / S / T / U / V / W /

CMap is a web-based tool that allows users to view comparisons of genetic and physical maps. The package also includes tools for curating map data.
...

Compares and masks protein or nucleotide sequences.
...

Maize cell wall catalog
...

no picture available
Predict presence of chloroplast transit peptides
...

Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions.Circos is ideal for creating publication-quality infographics and illustrations with a high data-to-ink ratio, richly layered ...

Colin Dewey's software: RSEM, Mercator, FSA, parametric, etc
...

Sequence contig, consensus, chromatogram editor (ace format)
...

Gene ontology interface
...

no picture available
Sequence comparison
...

Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many ...

no picture available
Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.Cleaning your data in this way is often required: Reads from small-RNA sequencing contain the 3’ sequencing adapter because the read is longer than the ...

Update: 02 Dec 2011
Creation date: 31 May 2011