Protein : Qrob_P0756110.2 Q. robur
Protein Identifier  ? Qrob_P0756110.2 Organism . Name  Quercus robur
Score  62.0 Score Type  egn
Protein Description  (M=2) PTHR11538:SF15 - PHENYLALANYL-TRNA SYNTHETASE Code Enzyme  EC:6.1.1.20
Gene Prediction Quality  validated Protein length 

Sequence

Length: 184  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0000049 tRNA binding Interacting selectively and non-covalently with transfer RNA.
GO:0043039 tRNA aminoacylation The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|crb:CARUB_v10023099mg 11 87 + 77 Gaps:5 16.87 486 73.17 2e-31 hypothetical protein
blastp_kegg lcl|aly:ARALYDRAFT_320017 11 87 + 77 Gaps:5 16.73 490 71.95 8e-31 hypothetical protein
blastp_kegg lcl|brp:103842499 11 87 + 77 Gaps:5 16.84 487 71.95 1e-30 probable phenylalanine--tRNA ligase alpha subunit
blastp_kegg lcl|cam:101499922 10 87 + 78 Gaps:5 17.01 488 68.67 2e-30 probable phenylalanine--tRNA ligase alpha subunit-like
blastp_kegg lcl|eus:EUTSA_v10007412mg 11 87 + 77 Gaps:5 16.21 506 70.73 3e-30 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_011G045200g 11 87 + 77 Gaps:5 16.40 500 70.73 6e-30 hypothetical protein
blastp_kegg lcl|gmx:100792325 11 87 + 77 Gaps:5 16.80 488 69.51 9e-30 probable phenylalanyl-tRNA synthetase alpha chain-like
blastp_kegg lcl|pper:PRUPEppa004882m2g 10 118 + 109 Gaps:24 29.78 366 60.55 9e-30 hypothetical protein
blastp_kegg lcl|mtr:MTR_4g070040 11 87 + 77 Gaps:5 14.64 560 68.29 9e-30 Phenylalanyl-tRNA synthetase beta subunit
blastp_kegg lcl|pmum:103335652 10 118 + 109 Gaps:24 22.38 487 60.55 2e-29 probable phenylalanine--tRNA ligase alpha subunit
blastp_pdb 3l4g_O 12 120 + 109 Gaps:21 20.87 508 53.77 1e-22 mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain
blastp_pdb 3l4g_M 12 120 + 109 Gaps:21 20.87 508 53.77 1e-22 mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain
blastp_pdb 3l4g_K 12 120 + 109 Gaps:21 20.87 508 53.77 1e-22 mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain
blastp_pdb 3l4g_I 12 120 + 109 Gaps:21 20.87 508 53.77 1e-22 mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain
blastp_pdb 3l4g_G 12 120 + 109 Gaps:21 20.87 508 53.77 1e-22 mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain
blastp_pdb 3l4g_E 12 120 + 109 Gaps:21 20.87 508 53.77 1e-22 mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain
blastp_pdb 3l4g_C 12 120 + 109 Gaps:21 20.87 508 53.77 1e-22 mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain
blastp_pdb 3l4g_A 12 120 + 109 Gaps:21 20.87 508 53.77 1e-22 mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain
blastp_uniprot_sprot sp|Q9T034|SYFA_ARATH 11 87 + 77 Gaps:5 16.91 485 68.29 3e-30 Probable phenylalanine--tRNA ligase alpha subunit OS Arabidopsis thaliana GN At4g39280 PE 2 SV 3
blastp_uniprot_sprot sp|Q8C0C7|SYFA_MOUSE 12 120 + 109 Gaps:21 20.87 508 55.66 4e-24 Phenylalanine--tRNA ligase alpha subunit OS Mus musculus GN Farsa PE 2 SV 1
blastp_uniprot_sprot sp|Q1JPX3|SYFA_DANRE 10 115 + 106 Gaps:18 20.12 497 57.00 8e-24 Phenylalanine--tRNA ligase alpha subunit OS Danio rerio GN farsa PE 2 SV 2
blastp_uniprot_sprot sp|Q54KS8|SYFA_DICDI 12 120 + 109 Gaps:20 21.56 487 53.33 4e-23 Phenylalanine--tRNA ligase alpha subunit OS Dictyostelium discoideum GN phesA PE 3 SV 1
blastp_uniprot_sprot sp|Q505J8|SYFA_RAT 12 120 + 109 Gaps:21 20.87 508 54.72 9e-23 Phenylalanine--tRNA ligase alpha subunit OS Rattus norvegicus GN Farsa PE 1 SV 1
blastp_uniprot_sprot sp|Q6AZG6|SYFAA_XENLA 12 115 + 104 Gaps:18 19.68 498 57.14 4e-22 Phenylalanine--tRNA ligase alpha subunit A OS Xenopus laevis GN farsa-a PE 2 SV 1
blastp_uniprot_sprot sp|Q7SYV0|SYFAB_XENLA 12 115 + 104 Gaps:18 19.64 499 57.14 4e-22 Phenylalanine--tRNA ligase alpha subunit B OS Xenopus laevis GN farsa-b PE 2 SV 1
blastp_uniprot_sprot sp|Q5RFA2|SYFA_PONAB 12 120 + 109 Gaps:21 20.87 508 53.77 5e-22 Phenylalanine--tRNA ligase alpha subunit OS Pongo abelii GN FARSA PE 2 SV 1
blastp_uniprot_sprot sp|Q9Y285|SYFA_HUMAN 12 120 + 109 Gaps:21 20.87 508 53.77 5e-22 Phenylalanine--tRNA ligase alpha subunit OS Homo sapiens GN FARSA PE 1 SV 3
blastp_uniprot_sprot sp|Q5ZJQ2|SYFA_CHICK 12 120 + 109 Gaps:21 23.93 443 52.83 3e-21 Phenylalanine--tRNA ligase alpha subunit OS Gallus gallus GN FARSA PE 1 SV 1
rpsblast_cdd gnl|CDD|178445 11 88 + 78 Gaps:5 16.87 492 66.27 2e-35 PLN02853 PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain.
rpsblast_cdd gnl|CDD|185556 10 88 + 79 Gaps:12 18.42 494 58.24 9e-27 PTZ00326 PTZ00326 phenylalanyl-tRNA synthetase alpha chain Provisional.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 10 88 79 PTHR11538:SF15 none none none
Phobius 1 140 140 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 32 88 57 SSF55681 none none none
Gene3D 32 89 58 G3DSA:3.30.930.10 none none none
PANTHER 10 88 79 PTHR11538 none none none
Pfam 40 89 50 PF01409 "KEGG:00970+6.1.1.20" tRNA synthetases class II core domain (F) IPR002319
Phobius 141 167 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 168 183 16 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting