Protein : Qrob_P0751540.2 Q. robur
Protein Identifier  ? Qrob_P0751540.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) 3.4.24.7 - Interstitial collagenase. Code Enzyme  EC:3.4.24.7
Gene Prediction Quality  validated Protein length 

Sequence

Length: 257  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

5 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0004222 metalloendopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO:0031012 extracellular matrix A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals and bacteria) or be part of the cell (as in plants).
GO:0008237 metallopeptidase activity Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_043465 20 253 + 234 Gaps:42 93.06 288 42.91 5e-55 Matrixin family protein putative
blastp_kegg lcl|pxb:103934446 20 253 + 234 Gaps:43 85.31 320 42.49 3e-54 metalloendoproteinase 1-like
blastp_kegg lcl|pxb:103958425 20 253 + 234 Gaps:43 85.31 320 42.49 3e-54 metalloendoproteinase 1-like
blastp_kegg lcl|pxb:103942759 21 253 + 233 Gaps:43 85.80 317 42.65 4e-54 metalloendoproteinase 1-like
blastp_kegg lcl|pmum:103332291 20 253 + 234 Gaps:53 71.65 381 42.49 6e-54 metalloendoproteinase 1-like
blastp_kegg lcl|pper:PRUPE_ppb025548mg 20 253 + 234 Gaps:52 86.35 315 42.28 2e-53 hypothetical protein
blastp_kegg lcl|mdm:103439499 23 253 + 231 Gaps:47 74.59 362 41.48 5e-51 metalloendoproteinase 1-like
blastp_kegg lcl|pop:POPTR_0013s03350g 17 255 + 239 Gaps:60 90.71 312 39.22 2e-50 POPTRDRAFT_241047 hypothetical protein
blastp_kegg lcl|pop:POPTR_0008s02790g 19 253 + 235 Gaps:40 87.80 295 42.86 4e-50 POPTRDRAFT_421450 hypothetical protein
blastp_kegg lcl|pop:POPTR_0019s10270g 16 255 + 240 Gaps:45 88.64 308 41.76 5e-50 hypothetical protein
blastp_pdb 1su3_B 65 253 + 189 Gaps:15 41.78 450 44.68 8e-35 mol:protein length:450 Interstitial collagenase
blastp_pdb 1su3_A 65 253 + 189 Gaps:15 41.78 450 44.68 8e-35 mol:protein length:450 Interstitial collagenase
blastp_pdb 1slm_A 65 253 + 189 Gaps:12 74.90 255 43.46 8e-30 mol:protein length:255 STROMELYSIN-1
blastp_pdb 4ayk_A 112 253 + 142 Gaps:9 82.25 169 46.04 2e-27 mol:protein length:169 PROTEIN (COLLAGENASE)
blastp_pdb 3ayk_A 112 253 + 142 Gaps:9 82.25 169 46.04 2e-27 mol:protein length:169 PROTEIN (COLLAGENASE)
blastp_pdb 2tcl_A 112 253 + 142 Gaps:9 82.25 169 46.04 2e-27 mol:protein length:169 FIBROBLAST COLLAGENASE
blastp_pdb 2ayk_A 112 253 + 142 Gaps:9 82.25 169 46.04 2e-27 mol:protein length:169 COLLAGENASE
blastp_pdb 1hfc_A 112 253 + 142 Gaps:9 82.25 169 46.04 2e-27 mol:protein length:169 FIBROBLAST COLLAGENASE
blastp_pdb 1ayk_A 112 253 + 142 Gaps:9 82.25 169 46.04 2e-27 mol:protein length:169 COLLAGENASE
blastp_pdb 2j0t_C 112 253 + 142 Gaps:9 81.76 170 46.04 2e-27 mol:protein length:170 INTERSTITIAL COLLAGENASE
blastp_uniprot_sprot sp|P29136|MEP1_SOYBN 22 253 + 232 Gaps:35 87.54 305 35.58 3e-38 Metalloendoproteinase 1 OS Glycine max PE 1 SV 2
blastp_uniprot_sprot sp|P03956|MMP1_HUMAN 65 253 + 189 Gaps:15 40.09 469 44.68 3e-34 Interstitial collagenase OS Homo sapiens GN MMP1 PE 1 SV 3
blastp_uniprot_sprot sp|Q9XSZ5|MMP1_HORSE 65 253 + 189 Gaps:17 40.09 469 45.74 1e-32 Interstitial collagenase OS Equus caballus GN MMP1 PE 2 SV 1
blastp_uniprot_sprot sp|P28053|MMP1_BOVIN 65 253 + 189 Gaps:15 40.09 469 42.55 2e-32 Interstitial collagenase OS Bos taurus GN MMP1 PE 1 SV 1
blastp_uniprot_sprot sp|P21692|MMP1_PIG 65 253 + 189 Gaps:17 40.09 469 44.68 5e-31 Interstitial collagenase OS Sus scrofa GN MMP1 PE 1 SV 2
blastp_uniprot_sprot sp|O55123|MMP10_MOUSE 38 256 + 219 Gaps:32 48.95 476 39.91 5e-31 Stromelysin-2 OS Mus musculus GN Mmp10 PE 2 SV 1
blastp_uniprot_sprot sp|P22757|HE_PARLI 34 255 + 222 Gaps:22 39.86 587 37.61 7e-31 Hatching enzyme OS Paracentrotus lividus PE 1 SV 1
blastp_uniprot_sprot sp|P13943|MMP1_RABIT 65 253 + 189 Gaps:15 40.17 468 42.02 2e-30 Interstitial collagenase OS Oryctolagus cuniculus GN MMP1 PE 2 SV 1
blastp_uniprot_sprot sp|P07152|MMP10_RAT 38 253 + 216 Gaps:28 48.32 476 40.00 2e-30 Stromelysin-2 OS Rattus norvegicus GN Mmp10 PE 2 SV 1
blastp_uniprot_sprot sp|P39900|MMP12_HUMAN 31 253 + 223 Gaps:23 47.66 470 40.18 3e-30 Macrophage metalloelastase OS Homo sapiens GN MMP12 PE 1 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 97 254 158 SSF55486 none none none
SUPERFAMILY 38 88 51 SSF47090 none none IPR002477
PANTHER 18 253 236 PTHR10201:SF131 none none none
SMART 93 255 163 SM00235 none Zinc-dependent metalloprotease IPR006026
Pfam 112 253 142 PF00413 none Matrixin IPR001818
Gene3D 35 254 220 G3DSA:3.40.390.10 none none IPR024079
PANTHER 18 253 236 PTHR10201 none none none
PRINTS 148 176 29 PR00138 none Matrixin signature IPR021190
PRINTS 207 232 26 PR00138 none Matrixin signature IPR021190
PRINTS 79 92 14 PR00138 none Matrixin signature IPR021190
PRINTS 241 254 14 PR00138 none Matrixin signature IPR021190
PRINTS 124 139 16 PR00138 none Matrixin signature IPR021190

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5

0 Targeting