3 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0006457 | protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. |
| GO:0051082 | unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
| GO:0016272 | prefoldin complex | A multisubunit chaperone that is capable of delivering unfolded proteins to cytosolic chaperonin, which it acts as a cofactor for. In humans, the complex is a heterohexamer of two PFD-alpha and four PFD-beta type subunits. In Saccharomyces cerevisiae, it also acts in the nucleus to regulate the rate of elongation by RNA polymerase II via a direct effect on histone dynamics. |
10 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|vvi:100260485 | 2 | 99 | + | 98 | Gaps:6 | 80.62 | 129 | 86.54 | 3e-54 | probable prefoldin subunit 1-like |
| blastp_kegg | lcl|tcc:TCM_044384 | 2 | 99 | + | 98 | Gaps:6 | 80.62 | 129 | 86.54 | 3e-54 | Prefoldin 1 |
| blastp_kegg | lcl|rcu:RCOM_1237470 | 2 | 99 | + | 98 | Gaps:6 | 80.62 | 129 | 82.69 | 9e-52 | Prefoldin subunit putative |
| blastp_kegg | lcl|pda:103714095 | 2 | 99 | + | 98 | Gaps:6 | 80.62 | 129 | 81.73 | 1e-50 | prefoldin subunit 1 |
| blastp_kegg | lcl|pop:POPTR_0006s07950g | 2 | 99 | + | 98 | Gaps:6 | 80.62 | 129 | 80.77 | 2e-50 | POPTRDRAFT_831873 prefoldin-related KE2 family protein |
| blastp_kegg | lcl|pper:PRUPE_ppa013327mg | 2 | 99 | + | 98 | Gaps:6 | 80.62 | 129 | 81.73 | 2e-50 | hypothetical protein |
| blastp_kegg | lcl|mdm:103414775 | 2 | 99 | + | 98 | Gaps:6 | 80.62 | 129 | 81.73 | 2e-50 | probable prefoldin subunit 1 |
| blastp_kegg | lcl|csv:101214200 | 2 | 98 | + | 97 | Gaps:6 | 79.84 | 129 | 81.55 | 3e-50 | probable prefoldin subunit 1-like |
| blastp_kegg | lcl|pxb:103952208 | 2 | 99 | + | 98 | Gaps:6 | 80.62 | 129 | 80.77 | 3e-50 | prefoldin subunit 1-like |
| blastp_kegg | lcl|mus:103980266 | 2 | 99 | + | 98 | Gaps:6 | 80.62 | 129 | 79.81 | 4e-50 | prefoldin subunit 1 |
6 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| PANTHER | 3 | 98 | 96 | PTHR20903 | none | none | none |
| Coils | 44 | 86 | 43 | Coil | none | none | none |
| Gene3D | 2 | 86 | 85 | G3DSA:1.10.287.370 | none | none | IPR009053 |
| Coils | 7 | 28 | 22 | Coil | none | none | none |
| Pfam | 2 | 85 | 84 | PF01920 | none | Prefoldin subunit | IPR002777 |
| SUPERFAMILY | 3 | 84 | 82 | SSF46579 | none | none | IPR009053 |
16 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Champenoux_2015_nPriLBD_3P | Qrob_Chr10 | 10 | v_15000_157 | v_15000_310 | 15,68 | 15,9 | 15,91 | lod | 2.4 | 5.5 |
| Bourran2_2014_nSecLBD_3P | Qrob_Chr08 | 8 | s_1BN2OD_551 | s_1B5AYF_599 | 17,17 | 0 | 43,51 | lod | 1,9229 | 4,4 |
| Bourran2_2014_nLBD*_3P | Qrob_Chr08 | 8 | v_5216_549 | v_11837_70 | 12,25 | 0 | 35,55 | lod | 2,5951 | 6 |
| Bourran2_2014_nP*_3P | Qrob_Chr08 | 8 | v_5216_549 | v_11837_70 | 12,19 | 0 | 31,97 | lod | 2,8472 | 6 |
| Bourran2_2002_QTL11_peak_Bud_burst_A4 | Qrob_Chr06 | 6 | s_1C41PA_791 | s_1AM1AV_1141 | 19,17 | 0 | 34,57 | lod | 2,3 | 2,9 |
| Bourran2_2014_aSeqBC_3P | Qrob_Chr06 | 6 | v_506_189 | v_686_77 | 30,72 | 13,58 | 43,48 | lod | 2,2746 | 6,3 |
| Bourran2_2014_aSeqBC*_A4 | Qrob_Chr06 | 6 | s_2F5MK3_712 | v_444_355 | 27,13 | 14,86 | 39,46 | lod | 3,7847 | 9,8 |
| Bourran2_2014_nEpis*_3P | Qrob_Chr08 | 8 | s_1DA4QW_688 | s_1DNI7D_820 | 17,96 | 0 | 37,75 | lod | 2,9745 | 7,5 |
| Bourran2_2014_nEpis*_A4 | Qrob_Chr07 | 7 | v_12400_446 | s_1BPEBU_1211 | 6,93 | 0 | 15,13 | lod | 4,7411 | 11 |
| Bourran2_2014_nFork*_3P | Qrob_Chr06 | 6 | v_12930_125 | s_1AMZEI_909 | 34,28 | 7,43 | 41,48 | lod | 2,4044 | 5,5 |
| Bourran2_2014_nLBD_A4 | Qrob_Chr06 | 6 | v_12930_125 | s_1AMZEI_909 | 37,41 | 9,8 | 50,1 | lod | 1,9524 | 4,1 |
| Bourran2_2014_nPriBD_A4 | Qrob_Chr06 | 6 | v_12930_125 | s_1AMZEI_909 | 34,51 | 3,36 | 51,86 | lod | 1,6747 | 3,9 |
| Bourran2_2014_nSecLBD_A4 | Qrob_Chr07 | 7 | v_8327_222 | s_1A4WGY_363 | 16,04 | 0 | 44,69 | lod | 2,6373 | 6,5 |
| Bourran2_2014_vEpiBC_A4 | Qrob_Chr06 | 6 | v_12930_125 | s_1AMZEI_909 | 37,55 | 14,41 | 50,01 | lod | 1,7882 | 4,8 |
| Champenoux_2015_nEpis_3P | Qrob_Chr11 | 11 | s_1DG9PM_867 | s_1BZ083_1312 | 26,53 | 25,47 | 27,72 | lod | 4.4 | 8.9 |
| Champenoux_2015_nP_3P | Qrob_Chr06 | 6 | s_1A386O_228 | s_1AYZFS_603 | 27,03 | 26,47 | 27,34 | lod | 2.8 | 7.2 |
