Protein : Qrob_P0728340.2 Q. robur
Protein Identifier  ? Qrob_P0728340.2 Organism . Name  Quercus robur
Score  32.0 Score Type  egn
Protein Description  (M=1) PF00521//PF01031 - DNA gyrase/topoisomerase IV, subunit A // Dynamin central region Gene Prediction Quality  validated
Protein length 

Sequence

Length: 660  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
GO:0006265 DNA topological change The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100253371 350 571 + 222 Gaps:68 18.94 1489 52.48 5e-63 DNA topoisomerase 2-like
blastp_kegg lcl|tcc:TCM_042757 332 572 + 241 Gaps:59 19.82 1473 52.74 2e-62 DNA topoisomerase 2 isoform 1
blastp_kegg lcl|cmo:103500322 332 556 + 225 Gaps:23 14.63 1490 56.42 7e-54 DNA topoisomerase 2
blastp_kegg lcl|rcu:RCOM_0966810 321 576 + 256 Gaps:63 25.66 1212 42.12 7e-54 DNA topoisomerase II putative (EC:1.3.1.74)
blastp_kegg lcl|csv:101215950 332 556 + 225 Gaps:23 14.94 1459 56.42 2e-53 DNA topoisomerase 2-like
blastp_kegg lcl|pop:POPTR_0001s27120g 348 576 + 229 Gaps:35 14.81 1485 55.45 6e-51 POPTRDRAFT_706393 DNA topoisomerase family protein
blastp_kegg lcl|mdm:103409964 348 533 + 186 Gaps:17 12.89 1435 61.08 2e-50 DNA topoisomerase 2-like
blastp_kegg lcl|mdm:103438420 348 533 + 186 Gaps:17 12.65 1462 61.08 3e-50 DNA topoisomerase 2-like
blastp_kegg lcl|cit:102615156 226 332 + 107 none 14.70 728 81.31 2e-49 dynamin-related protein 3A-like
blastp_kegg lcl|pper:PRUPE_ppa000202mg 332 576 + 245 Gaps:17 16.59 1471 52.87 4e-49 hypothetical protein
blastp_pdb 3qx3_B 342 486 + 145 Gaps:4 17.81 803 34.97 8e-17 mol:protein length:803 DNA topoisomerase 2-beta
blastp_pdb 3qx3_A 342 486 + 145 Gaps:4 17.81 803 34.97 8e-17 mol:protein length:803 DNA topoisomerase 2-beta
blastp_pdb 3snh_A 226 365 + 140 Gaps:15 16.82 743 30.40 2e-10 mol:protein length:743 Dynamin-1
blastp_pdb 3zvr_A 226 365 + 140 Gaps:15 16.19 772 31.20 3e-10 mol:protein length:772 DYNAMIN-1
blastp_pdb 3l4k_A 340 472 + 133 Gaps:14 19.42 757 33.33 5e-09 mol:protein length:757 DNA topoisomerase 2
blastp_pdb 3l4j_A 340 472 + 133 Gaps:14 19.42 757 33.33 5e-09 mol:protein length:757 DNA topoisomerase 2
blastp_pdb 2rgr_A 340 472 + 133 Gaps:14 19.37 759 33.33 5e-09 mol:protein length:759 DNA topoisomerase 2
blastp_pdb 1bjt_A 340 472 + 133 Gaps:14 18.54 793 33.33 6e-09 mol:protein length:793 TOPOISOMERASE II
blastp_pdb 1bgw_A 340 472 + 133 Gaps:14 18.54 793 33.33 6e-09 mol:protein length:793 TOPOISOMERASE
blastp_uniprot_sprot sp|Q8LFT2|DRP3B_ARATH 226 332 + 107 none 13.72 780 67.29 4e-41 Dynamin-related protein 3B OS Arabidopsis thaliana GN DRP3B PE 1 SV 2
blastp_uniprot_sprot sp|Q8S944|DRP3A_ARATH 226 332 + 107 none 13.24 808 65.42 7e-41 Dynamin-related protein 3A OS Arabidopsis thaliana GN DRP3A PE 1 SV 2
blastp_uniprot_sprot sp|P30182|TOP2_ARATH 335 549 + 215 Gaps:19 15.34 1473 44.25 5e-36 DNA topoisomerase 2 OS Arabidopsis thaliana GN TOP2 PE 2 SV 2
blastp_uniprot_sprot sp|O24308|TOP2_PEA 331 516 + 186 Gaps:13 13.47 1462 40.10 3e-27 DNA topoisomerase 2 OS Pisum sativum GN TOP2 PE 2 SV 1
blastp_uniprot_sprot sp|P08096|TOP2_SCHPO 322 576 + 255 Gaps:74 21.35 1485 28.08 6e-18 DNA topoisomerase 2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN top2 PE 1 SV 2
blastp_uniprot_sprot sp|Q94464|DYNA_DICDI 226 322 + 97 none 11.37 853 42.27 3e-17 Dynamin-A OS Dictyostelium discoideum GN dymA PE 1 SV 2
blastp_uniprot_sprot sp|P54861|DNM1_YEAST 226 345 + 120 Gaps:8 14.80 757 39.29 6e-17 Dynamin-related protein DNM1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN DNM1 PE 1 SV 1
blastp_uniprot_sprot sp|Q02880|TOP2B_HUMAN 342 488 + 147 Gaps:10 9.29 1626 35.10 2e-16 DNA topoisomerase 2-beta OS Homo sapiens GN TOP2B PE 1 SV 3
blastp_uniprot_sprot sp|Q9URZ5|VPS1_SCHPO 229 327 + 99 Gaps:1 14.75 678 36.00 2e-15 Vacuolar protein sorting-associated protein 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN vps1 PE 3 SV 2
blastp_uniprot_sprot sp|Q64399|TOP2B_CRILO 342 488 + 147 Gaps:10 9.37 1612 35.10 2e-15 DNA topoisomerase 2-beta OS Cricetulus longicaudatus GN TOP2B PE 2 SV 1
rpsblast_cdd gnl|CDD|178775 332 593 + 262 Gaps:60 21.16 1465 46.77 5e-63 PLN03237 PLN03237 DNA topoisomerase 2 Provisional.

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 226 350 125 PTHR11566 none none IPR022812
PANTHER 482 517 36 PTHR11566 none none IPR022812
Pfam 221 326 106 PF01031 none Dynamin central region IPR000375
PANTHER 482 517 36 PTHR11566:SF21 none none none
SUPERFAMILY 323 479 157 SSF56719 none none IPR013760
PANTHER 226 350 125 PTHR11566:SF21 none none none
SMART 154 466 313 SM00434 none DNA Topoisomerase IV IPR002205
Pfam 321 468 148 PF00521 none DNA gyrase/topoisomerase IV, subunit A IPR002205
Gene3D 332 481 150 G3DSA:1.10.268.10 none none IPR013757
Coils 438 459 22 Coil none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting