Protein : Qrob_P0725190.2 Q. robur
Protein Identifier  ? Qrob_P0725190.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K02701 - photosystem I subunit PsaN Gene Prediction Quality  validated
Protein length 

Sequence

Length: 174  
Kegg Orthology  K02701
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0009522 photosystem I A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0005516 calmodulin binding Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.
GO:0042651 thylakoid membrane The pigmented membrane of any thylakoid.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0007s04160g 1 173 + 173 Gaps:1 100.00 172 80.81 1e-92 POPTRDRAFT_832238 hypothetical protein
blastp_kegg lcl|pop:POPTR_0005s06420g 1 173 + 173 Gaps:1 100.00 172 83.72 3e-92 POPTRDRAFT_715775 hypothetical protein
blastp_kegg lcl|cmo:103485284 1 173 + 173 Gaps:6 100.00 171 81.87 2e-90 photosystem I reaction center subunit N chloroplastic
blastp_kegg lcl|tcc:TCM_001498 1 173 + 173 Gaps:2 100.00 173 81.50 1e-89 Photosystem I reaction center subunit PSI
blastp_kegg lcl|csv:101204396 1 173 + 173 Gaps:6 100.00 171 80.70 5e-89 photosystem I reaction center subunit N chloroplastic-like
blastp_kegg lcl|cic:CICLE_v10002687mg 1 173 + 173 Gaps:7 100.00 170 80.00 2e-88 hypothetical protein
blastp_kegg lcl|cit:102611607 1 173 + 173 Gaps:7 100.00 170 80.00 2e-88 photosystem I reaction center subunit N chloroplastic-like
blastp_kegg lcl|vvi:100232935 1 173 + 173 none 100.00 173 81.50 4e-88 PSAN photosystem I reaction center subunit N-like
blastp_kegg lcl|mtr:MTR_3g095540 1 173 + 173 Gaps:5 100.00 172 79.07 6e-88 Photosystem I reaction center subunit N
blastp_kegg lcl|rcu:RCOM_1463130 1 173 + 173 Gaps:6 100.00 169 82.84 4e-87 Photosystem I reaction center subunit N chloroplast precursor putative
blastp_pdb 2wsf_N 1 173 + 173 Gaps:7 100.00 170 76.47 1e-78 mol:protein length:170 PHOTOSYSTEM I-N SUBUNIT
blastp_pdb 2wse_N 1 173 + 173 Gaps:7 100.00 170 76.47 1e-78 mol:protein length:170 PHOTOSYSTEM I-N SUBUNIT
blastp_pdb 2wsc_N 1 173 + 173 Gaps:7 100.00 170 76.47 1e-78 mol:protein length:170 PHOTOSYSTEM I-N SUBUNIT
blastp_pdb 3lw5_N 89 173 + 85 none 100.00 85 92.94 6e-55 mol:protein length:85 Photosystem I-N subunit
blastp_pdb 2o01_N 89 173 + 85 none 100.00 85 92.94 6e-55 mol:protein length:85 Photosystem I-N subunit
blastp_uniprot_sprot sp|P49107|PSAN_ARATH 1 173 + 173 Gaps:4 100.00 171 69.01 2e-80 Photosystem I reaction center subunit N chloroplastic OS Arabidopsis thaliana GN PSAN PE 1 SV 2
blastp_uniprot_sprot sp|P31093|PSAN_HORVU 1 173 + 173 Gaps:28 100.00 145 66.90 3e-52 Photosystem I reaction center subunit N chloroplastic OS Hordeum vulgare GN PSAN PE 2 SV 1
blastp_uniprot_sprot sp|O65107|PSAN_MAIZE 82 173 + 92 none 82.14 112 80.43 2e-51 Photosystem I reaction center subunit N chloroplastic (Fragment) OS Zea mays GN PSAN PE 3 SV 1
blastp_uniprot_sprot sp|Q9SBN5|PSAN_VOLCA 90 167 + 78 none 56.12 139 62.82 9e-27 Photosystem I reaction center subunit N chloroplastic OS Volvox carteri GN PSAN PE 2 SV 1
rpsblast_cdd gnl|CDD|177685 36 173 + 138 none 99.28 139 70.29 3e-59 PLN00054 PLN00054 photosystem I reaction center subunit N Provisional.
rpsblast_cdd gnl|CDD|114215 42 173 + 132 Gaps:3 93.48 138 72.87 3e-51 pfam05479 PsaN Photosystem I reaction centre subunit N (PSAN or PSI-N). This family contains several Photosystem I reaction centre subunit N (PSI-N) proteins. The protein has no known function although it is localised in the thylakoid lumen. PSI-N is a small extrinsic subunit at the lumen side and is very likely involved in the docking of plastocyanin.

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 43 173 131 PF05479 none Photosystem I reaction centre subunit N (PSAN or PSI-N) IPR008796
Gene3D 89 173 85 G3DSA:4.10.1190.10 none none IPR008796

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4

0 Targeting