Protein : Qrob_P0719550.2 Q. robur
Protein Identifier  ? Qrob_P0719550.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) PTHR11434:SF1 - NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4L Gene Prediction Quality  validated
Protein length 

Sequence

Length: 195  
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0 Synonyms

10 GO Terms

Identifier Name Description
GO:0009522 photosystem I A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0009055 electron carrier activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
GO:0016651 oxidoreductase activity, acting on NAD(P)H Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
GO:0051539 4 iron, 4 sulfur cluster binding Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
GO:0051536 iron-sulfur cluster binding Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
GO:0042651 thylakoid membrane The pigmented membrane of any thylakoid.
GO:0042773 ATP synthesis coupled electron transport The transfer of electrons through a series of electron donors and acceptors, generating energy that is ultimately used for synthesis of ATP.
GO:0009773 photosynthetic electron transport in photosystem I A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|atr:AmtrCp079 114 194 + 81 none 100.00 81 92.59 5e-50 psaC photosystem I iron-sulfur center
blastp_kegg lcl|sot:4099906 114 194 + 81 none 100.00 81 92.59 5e-50 psaC SotuCp076 photosystem I iron-sulfur center
blastp_kegg lcl|sly:3950411 114 194 + 81 none 100.00 81 92.59 5e-50 psaC LyesC2p016 photosystem I subunit VII
blastp_kegg lcl|vvi:4025040 114 194 + 81 none 100.00 81 92.59 5e-50 psaC ViviCp075 photosystem I iron-sulfur center
blastp_kegg lcl|vvi:7498557 114 194 + 81 none 100.00 81 92.59 5e-50 psaC ViviM_p071 PSI 9 kDa protein
blastp_kegg lcl|pop:Poptr_cp080 114 194 + 81 none 100.00 81 92.59 5e-50 psaC photosystem I subunit VII
blastp_kegg lcl|pmum:18668092 114 194 + 81 none 100.00 81 92.59 5e-50 psaC CP95_p014 photosystem I subunit VII
blastp_kegg lcl|pper:PrpeC_p073 114 194 + 81 none 100.00 81 92.59 5e-50 psaC photosystem I subunit VII
blastp_kegg lcl|fve:10251584 114 194 + 81 none 100.00 81 92.59 5e-50 psaC FvH4_C0106 photosystem I subunit VII
blastp_kegg lcl|fve:101298959 114 194 + 81 none 100.00 81 92.59 5e-50 photosystem I iron-sulfur center-like
blastp_pdb 3lw5_C 114 194 + 81 none 100.00 81 91.36 6e-51 mol:protein length:81 Photosystem I iron-sulfur center
blastp_pdb 2wsf_C 114 194 + 81 none 100.00 81 91.36 6e-51 mol:protein length:81 PHOTOSYSTEM I IRON-SULFUR CENTER
blastp_pdb 2wse_C 114 194 + 81 none 100.00 81 91.36 6e-51 mol:protein length:81 PHOTOSYSTEM I IRON-SULFUR CENTER
blastp_pdb 2wsc_C 114 194 + 81 none 100.00 81 91.36 6e-51 mol:protein length:81 PHOTOSYSTEM I IRON-SULFUR CENTER
blastp_pdb 2o01_C 115 194 + 80 none 100.00 80 91.25 4e-50 mol:protein length:80 Photosystem I iron-sulfur center
blastp_pdb 3pcq_C 115 194 + 80 none 100.00 80 83.75 4e-46 mol:protein length:80 Photosystem I iron-sulfur center
blastp_pdb 1jb0_C 115 194 + 80 none 100.00 80 83.75 4e-46 mol:protein length:80 PHOTOSYSTEM I IRON-SULFUR CENTER
blastp_pdb 1k0t_A 115 194 + 80 none 100.00 80 83.75 2e-45 mol:protein length:80 PSAC SUBUNIT OF PHOTOSYSTEM I
blastp_pdb 3rko_G 3 94 + 92 Gaps:2 90.00 100 35.56 2e-12 mol:protein length:100 NADH-QUINONE OXIDOREDUCTASE SUBUNIT K
blastp_pdb 3rko_K 3 94 + 92 Gaps:2 90.00 100 35.56 2e-12 mol:protein length:100 NADH-QUINONE OXIDOREDUCTASE SUBUNIT K
blastp_uniprot_sprot sp|Q332S6|PSAC_LACSA 114 194 + 81 none 100.00 81 93.83 8e-52 Photosystem I iron-sulfur center OS Lactuca sativa GN psaC PE 3 SV 1
blastp_uniprot_sprot sp|Q1KXQ4|PSAC_HELAN 114 194 + 81 none 100.00 81 93.83 8e-52 Photosystem I iron-sulfur center OS Helianthus annuus GN psaC PE 3 SV 1
blastp_uniprot_sprot sp|Q0ZIW7|PSAC_VITVI 114 194 + 81 none 100.00 81 92.59 2e-51 Photosystem I iron-sulfur center OS Vitis vinifera GN psaC PE 3 SV 1
blastp_uniprot_sprot sp|P62094|PSAC_TOBAC 114 194 + 81 none 100.00 81 92.59 2e-51 Photosystem I iron-sulfur center OS Nicotiana tabacum GN psaC PE 1 SV 2
blastp_uniprot_sprot sp|Q2PMN3|PSAC_SOYBN 114 194 + 81 none 100.00 81 92.59 2e-51 Photosystem I iron-sulfur center OS Glycine max GN psaC PE 1 SV 1
blastp_uniprot_sprot sp|Q2VEC9|PSAC_SOLTU 114 194 + 81 none 100.00 81 92.59 2e-51 Photosystem I iron-sulfur center OS Solanum tuberosum GN psaC PE 3 SV 1
blastp_uniprot_sprot sp|Q2MI49|PSAC_SOLLC 114 194 + 81 none 100.00 81 92.59 2e-51 Photosystem I iron-sulfur center OS Solanum lycopersicum GN psaC PE 3 SV 1
blastp_uniprot_sprot sp|Q2MID6|PSAC_SOLBU 114 194 + 81 none 100.00 81 92.59 2e-51 Photosystem I iron-sulfur center OS Solanum bulbocastanum GN psaC PE 3 SV 1
blastp_uniprot_sprot sp|A4GYW7|PSAC_POPTR 114 194 + 81 none 100.00 81 92.59 2e-51 Photosystem I iron-sulfur center OS Populus trichocarpa GN psaC PE 3 SV 1
blastp_uniprot_sprot sp|Q14FA7|PSAC_POPAL 114 194 + 81 none 100.00 81 92.59 2e-51 Photosystem I iron-sulfur center OS Populus alba GN psaC PE 3 SV 1

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 112 179 68 SSF54862 none none none
Hamap 1 101 101 MF_01456 none NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. IPR001133
Phobius 50 60 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 61 86 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 5 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
TIGRFAM 115 194 80 TIGR03048 "MetaCyc:PWY-101","MetaCyc:PWY-6785" PS_I_psaC: photosystem I iron-sulfur protein PsaC IPR017491
PANTHER 1 126 126 PTHR11434:SF1 none none none
PANTHER 1 126 126 PTHR11434 none none IPR001133
Pfam 118 139 22 PF00037 none 4Fe-4S binding domain IPR001450
Phobius 24 29 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 115 144 30 PS51379 none 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. IPR017896
Phobius 87 194 108 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 152 181 30 PS51379 none 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. IPR017896
Hamap 114 194 81 MF_01303 "MetaCyc:PWY-101","MetaCyc:PWY-6785" Photosystem I iron-sulfur center [psaC]. IPR017491
ProSitePatterns 124 135 12 PS00198 none 4Fe-4S ferredoxin-type iron-sulfur binding region signature. IPR017900
Phobius 30 49 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 121 182 62 G3DSA:3.30.70.20 none none none
Phobius 6 23 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 6 100 95 PF00420 none NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IPR001133

3 Localization

Analysis Start End Length
TMHMM 5 22 17
TMHMM 64 86 22
TMHMM 27 49 22

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting