Protein : Qrob_P0715520.2 Q. robur
Protein Identifier  ? Qrob_P0715520.2 Organism . Name  Quercus robur
Score  98.2 Score Type  egn
Protein Description  (M=8) PTHR18966//PTHR18966:SF153 - IONOTROPIC GLUTAMATE RECEPTOR // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 922  
Kegg Orthology  K05387
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0004970 ionotropic glutamate receptor activity Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts.
GO:0007186 G-protein coupled receptor signaling pathway A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576).
GO:0004930 G-protein coupled receptor activity Combining with an extracellular signal and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.

46 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103329388 1 918 + 918 Gaps:45 99.67 912 71.40 0.0 glutamate receptor 3.7
blastp_kegg lcl|pper:PRUPE_ppa001093mg 1 918 + 918 Gaps:44 99.67 911 71.48 0.0 hypothetical protein
blastp_kegg lcl|vvi:100255191 1 921 + 921 Gaps:46 100.00 909 69.53 0.0 glutamate receptor 3.7-like
blastp_kegg lcl|cic:CICLE_v10014190mg 5 916 + 912 Gaps:44 98.80 913 70.95 0.0 hypothetical protein
blastp_kegg lcl|cit:102611344 5 916 + 912 Gaps:44 98.80 913 70.95 0.0 glutamate receptor 3.7-like
blastp_kegg lcl|tcc:TCM_011336 1 914 + 914 Gaps:43 98.16 922 68.73 0.0 Glutamate receptor isoform 1
blastp_kegg lcl|rcu:RCOM_0487570 7 921 + 915 Gaps:45 98.37 921 69.21 0.0 glutamate receptor 3 plant putative
blastp_kegg lcl|mdm:103404811 1 921 + 921 Gaps:45 100.00 912 67.76 0.0 glutamate receptor 3.7-like
blastp_kegg lcl|cmo:103495956 15 914 + 900 Gaps:46 97.81 914 67.79 0.0 glutamate receptor 3.7-like
blastp_kegg lcl|pxb:103944534 1 921 + 921 Gaps:45 97.85 930 66.37 0.0 glutamate receptor 3.7
blastp_pdb 3kg2_D 391 875 + 485 Gaps:87 60.75 823 23.80 2e-22 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_C 391 875 + 485 Gaps:87 60.75 823 23.80 2e-22 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_B 391 875 + 485 Gaps:87 60.75 823 23.80 2e-22 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_A 391 875 + 485 Gaps:87 60.75 823 23.80 2e-22 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3q41_C 136 486 + 351 Gaps:73 75.00 384 28.47 2e-18 mol:protein length:384 Glutamate [NMDA] receptor subunit zeta-1
blastp_pdb 3q41_B 136 486 + 351 Gaps:73 75.00 384 28.47 2e-18 mol:protein length:384 Glutamate [NMDA] receptor subunit zeta-1
blastp_pdb 3q41_A 136 486 + 351 Gaps:73 75.00 384 28.47 2e-18 mol:protein length:384 Glutamate [NMDA] receptor subunit zeta-1
blastp_pdb 3qlu_D 105 457 + 353 Gaps:49 85.57 395 25.15 3e-12 mol:protein length:395 Glutamate receptor ionotropic kainate 2
blastp_pdb 3qlu_C 105 457 + 353 Gaps:49 85.57 395 25.15 3e-12 mol:protein length:395 Glutamate receptor ionotropic kainate 2
blastp_pdb 3qlt_B 105 457 + 353 Gaps:49 85.57 395 25.15 3e-12 mol:protein length:395 Glutamate receptor ionotropic kainate 2
blastp_uniprot_sprot sp|Q9SDQ4|GLR37_ARATH 4 915 + 912 Gaps:60 97.07 921 56.49 0.0 Glutamate receptor 3.7 OS Arabidopsis thaliana GN GLR3.7 PE 2 SV 2
blastp_uniprot_sprot sp|Q9C8E7|GLR33_ARATH 23 905 + 883 Gaps:65 93.68 933 50.11 0.0 Glutamate receptor 3.3 OS Arabidopsis thaliana GN GLR3.3 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GXJ4|GLR34_ARATH 25 909 + 885 Gaps:56 91.45 959 48.12 0.0 Glutamate receptor 3.4 OS Arabidopsis thaliana GN GLR3.4 PE 2 SV 2
blastp_uniprot_sprot sp|Q93YT1|GLR32_ARATH 27 915 + 889 Gaps:58 95.94 912 48.69 0.0 Glutamate receptor 3.2 OS Arabidopsis thaliana GN GLR3.2 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SW97|GLR35_ARATH 30 909 + 880 Gaps:56 92.13 953 47.38 0.0 Glutamate receptor 3.5 OS Arabidopsis thaliana GN GLR3.5 PE 2 SV 2
blastp_uniprot_sprot sp|Q84W41|GLR36_ARATH 27 907 + 881 Gaps:57 94.80 903 47.90 0.0 Glutamate receptor 3.6 OS Arabidopsis thaliana GN GLR3.6 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XJL2|GLR31_ARATH 27 915 + 889 Gaps:60 95.01 921 48.23 0.0 Glutamate receptor 3.1 OS Arabidopsis thaliana GN GLR3.1 PE 2 SV 2
blastp_uniprot_sprot sp|Q7XP59|GLR31_ORYSJ 27 908 + 882 Gaps:53 93.71 938 45.96 0.0 Glutamate receptor 3.1 OS Oryza sativa subsp. japonica GN GLR3.1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LFN5|GLR25_ARATH 112 881 + 770 Gaps:55 84.20 918 34.02 4e-138 Glutamate receptor 2.5 OS Arabidopsis thaliana GN GLR2.5 PE 2 SV 2
blastp_uniprot_sprot sp|O04660|GLR21_ARATH 116 865 + 750 Gaps:52 84.13 901 34.96 7e-137 Glutamate receptor 2.1 OS Arabidopsis thaliana GN GLR2.1 PE 2 SV 2

38 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 634 652 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 24 24 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 473 915 443 PTHR18966 none none none
Phobius 653 675 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 5 16 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SMART 494 819 326 SM00079 none Eukaryotic homologues of bacterial periplasmic substrate binding proteins. IPR001320
Pfam 656 848 193 PF00060 none Ligand-gated ion channel IPR001320
Pfam 47 428 382 PF01094 none Receptor family ligand binding region IPR001828
PANTHER 100 446 347 PTHR18966:SF153 none none none
PIRSF 105 917 813 PIRSF037090 none none IPR017103
Phobius 861 921 61 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SMART 492 820 329 SM00062 none Bacterial periplasmic substrate-binding proteins IPR001638
SUPERFAMILY 473 485 13 SSF53822 none none IPR028082
SUPERFAMILY 24 85 62 SSF53822 none none IPR028082
SUPERFAMILY 112 441 330 SSF53822 none none IPR028082
Phobius 1 4 4 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 17 24 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Pfam 511 817 307 PF00497 none Bacterial extracellular solute-binding proteins, family 3 none
SUPERFAMILY 704 817 114 SSF53850 none none none
SUPERFAMILY 471 617 147 SSF53850 none none none
Phobius 613 633 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 489 587 99 G3DSA:3.40.190.10 none none none
Gene3D 776 817 42 G3DSA:3.40.190.10 none none none
PRINTS 175 191 17 PR00248 "Reactome:REACT_14797" Metabotropic glutamate GPCR signature IPR000337
PRINTS 156 175 20 PR00248 "Reactome:REACT_14797" Metabotropic glutamate GPCR signature IPR000337
PRINTS 58 77 20 PR00248 "Reactome:REACT_14797" Metabotropic glutamate GPCR signature IPR000337
PRINTS 191 208 18 PR00248 "Reactome:REACT_14797" Metabotropic glutamate GPCR signature IPR000337
PRINTS 124 150 27 PR00248 "Reactome:REACT_14797" Metabotropic glutamate GPCR signature IPR000337
Phobius 676 837 162 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 473 915 443 PTHR18966:SF153 none none none

4 Localization

Analysis Start End Length
TMHMM 611 633 22
TMHMM 838 860 22
SignalP_EUK 1 24 23
TMHMM 653 675 22

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting