Protein : Qrob_P0682770.2 Q. robur
Protein Identifier  ? Qrob_P0682770.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K02723 - photosystem II PsbY protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 203  
Kegg Orthology  K02723
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0030145 manganese ion binding Interacting selectively and non-covalently with manganese (Mn) ions.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0009523 photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.

13 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100252545 1 202 + 202 Gaps:1 100.00 201 84.58 8e-105 photosystem II core complex proteins psbY chloroplastic-like
blastp_kegg lcl|tcc:TCM_010679 11 202 + 192 Gaps:1 95.02 201 79.06 4e-92 Photosystem II core complex proteins psbY
blastp_kegg lcl|mdm:103430669 1 202 + 202 Gaps:5 100.00 200 77.00 3e-91 photosystem II core complex proteins psbY chloroplastic-like
blastp_kegg lcl|pop:POPTR_0010s06190g 1 202 + 202 Gaps:6 100.00 196 81.12 5e-88 POPTRDRAFT_726168 Photosystem II core complex proteins psbY
blastp_kegg lcl|pxb:103949857 1 201 + 201 Gaps:2 100.00 199 75.88 2e-83 photosystem II core complex proteins psbY chloroplastic
blastp_kegg lcl|gmx:100814665 1 202 + 202 Gaps:13 100.00 197 76.65 2e-82 photosystem II core complex proteins psbY chloroplastic-like
blastp_kegg lcl|pop:POPTR_0008s18230g 7 201 + 195 Gaps:6 98.44 192 79.37 5e-82 POPTRDRAFT_820850 Photosystem II core complex proteins psbY
blastp_kegg lcl|pper:PRUPE_ppa011725mg 1 201 + 201 Gaps:6 100.00 199 77.89 2e-81 hypothetical protein
blastp_kegg lcl|pmum:103321884 1 201 + 201 Gaps:6 100.00 199 77.39 3e-81 photosystem II core complex proteins psbY chloroplastic
blastp_kegg lcl|sly:101259494 1 202 + 202 Gaps:12 100.00 194 76.80 7e-81 photosystem II core complex proteins psbY chloroplastic-like
blastp_uniprot_sprot sp|P80470|PSBY_SPIOL 10 202 + 193 Gaps:20 94.97 199 61.38 7e-60 Photosystem II core complex proteins psbY chloroplastic OS Spinacia oleracea GN PSBY PE 1 SV 2
blastp_uniprot_sprot sp|O49347|PSBY_ARATH 14 201 + 188 Gaps:28 94.18 189 58.43 3e-45 Photosystem II core complex proteins psbY chloroplastic OS Arabidopsis thaliana GN PSBY PE 2 SV 1
rpsblast_cdd gnl|CDD|177694 5 202 + 198 Gaps:6 100.00 194 71.65 4e-66 PLN00063 PLN00063 photosystem II core complex proteins psbY Provisional.

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 120 130 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 96 96 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 93 125 33 PF06298 none Photosystem II protein Y (PsbY) IPR009388
Pfam 173 199 27 PF06298 none Photosystem II protein Y (PsbY) IPR009388
Phobius 97 119 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 131 151 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 171 189 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 152 170 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 190 202 13 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

5 Localization

Analysis Start End Length
TMHMM 170 189 19
TMHMM 128 150 22
TMHMM 96 115 19
SignalP_GRAM_POSITIVE 1 19 18
TMHMM 54 76 22

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5

0 Targeting