Protein : Qrob_P0676870.2 Q. robur
Protein Identifier  ? Qrob_P0676870.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K10739 - replication factor A2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 282  
Kegg Orthology  K10739
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0006260 DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO:0006310 DNA recombination Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa009666mg 1 281 + 281 Gaps:1 100.00 282 78.37 1e-160 hypothetical protein
blastp_kegg lcl|pmum:103320082 1 281 + 281 Gaps:1 100.00 282 77.66 6e-159 replication protein A 32 kDa subunit A
blastp_kegg lcl|pxb:103953568 1 281 + 281 Gaps:1 100.00 282 76.95 6e-156 replication protein A 32 kDa subunit A-like
blastp_kegg lcl|mdm:103456110 1 281 + 281 Gaps:1 100.00 282 76.60 3e-155 replication protein A 32 kDa subunit A
blastp_kegg lcl|pxb:103931160 1 281 + 281 Gaps:1 100.00 282 73.05 2e-146 replication protein A 32 kDa subunit A-like
blastp_kegg lcl|pop:POPTR_0006s29060g 1 278 + 278 Gaps:14 100.00 282 70.57 9e-138 replication family protein
blastp_kegg lcl|pvu:PHAVU_001G058500g 1 276 + 276 Gaps:1 99.28 277 66.91 1e-136 hypothetical protein
blastp_kegg lcl|cam:101488975 1 276 + 276 Gaps:5 99.27 273 67.53 1e-131 replication protein A 32 kDa subunit A-like
blastp_kegg lcl|gmx:100802512 1 276 + 276 Gaps:1 99.28 277 66.18 1e-129 replication protein A 32 kDa subunit A-like
blastp_kegg lcl|gmx:100789756 1 276 + 276 Gaps:3 93.49 292 66.30 2e-128 replication protein A 32 kDa subunit A-like
blastp_pdb 2z6k_B 30 278 + 249 Gaps:30 88.52 270 33.05 1e-24 mol:protein length:270 Replication protein A 32 kDa subunit
blastp_pdb 2z6k_A 30 278 + 249 Gaps:30 88.52 270 33.05 1e-24 mol:protein length:270 Replication protein A 32 kDa subunit
blastp_pdb 2pi2_D 30 278 + 249 Gaps:30 88.52 270 33.05 1e-24 mol:protein length:270 Replication protein A 32 kDa subunit
blastp_pdb 2pi2_C 30 278 + 249 Gaps:30 88.52 270 33.05 1e-24 mol:protein length:270 Replication protein A 32 kDa subunit
blastp_pdb 2pi2_B 30 278 + 249 Gaps:30 88.52 270 33.05 1e-24 mol:protein length:270 Replication protein A 32 kDa subunit
blastp_pdb 2pi2_A 30 278 + 249 Gaps:30 88.52 270 33.05 1e-24 mol:protein length:270 Replication protein A 32 kDa subunit
blastp_pdb 3kdf_B 40 165 + 126 Gaps:4 93.94 132 33.06 1e-16 mol:protein length:132 Replication protein A 32 kDa subunit
blastp_pdb 3kdf_D 40 165 + 126 Gaps:4 93.94 132 33.06 1e-16 mol:protein length:132 Replication protein A 32 kDa subunit
blastp_pdb 2pqa_C 40 165 + 126 Gaps:4 94.66 131 33.06 1e-16 mol:protein length:131 Replication protein A 32 kDa subunit
blastp_pdb 2pqa_A 40 165 + 126 Gaps:4 94.66 131 33.06 1e-16 mol:protein length:131 Replication protein A 32 kDa subunit
blastp_uniprot_sprot sp|Q9ZQ19|RFA2A_ARATH 1 276 + 276 Gaps:9 98.57 279 51.27 6e-89 Replication protein A 32 kDa subunit A OS Arabidopsis thaliana GN RPA2A PE 1 SV 2
blastp_uniprot_sprot sp|Q8LFJ8|RFA2B_ARATH 7 281 + 275 Gaps:12 98.20 278 43.22 2e-70 Replication protein A 32 kDa subunit B OS Arabidopsis thaliana GN RPA2B PE 2 SV 1
blastp_uniprot_sprot sp|Q6H7J5|RFA2B_ORYSJ 9 281 + 273 Gaps:19 93.29 298 42.81 9e-64 Replication protein A 32 kDa subunit B OS Oryza sativa subsp. japonica GN RPA2B PE 1 SV 1
blastp_uniprot_sprot sp|Q6K9U2|RFA2A_ORYSJ 1 277 + 277 Gaps:24 98.57 279 44.00 4e-60 Replication protein A 32 kDa subunit A OS Oryza sativa subsp. japonica GN RPA2A PE 1 SV 1
blastp_uniprot_sprot sp|Q5Z8L1|RFA2C_ORYSJ 31 281 + 251 Gaps:8 52.33 430 41.78 2e-29 Replication protein A 32 kDa subunit C OS Oryza sativa subsp. japonica GN RPA2C PE 1 SV 2
blastp_uniprot_sprot sp|Q63528|RFA2_RAT 14 278 + 265 Gaps:27 93.33 270 31.35 1e-25 Replication protein A 32 kDa subunit OS Rattus norvegicus GN Rpa2 PE 2 SV 2
blastp_uniprot_sprot sp|Q92373|RFA2_SCHPO 8 277 + 270 Gaps:25 93.55 279 32.95 2e-25 Replication factor A protein 2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN ssb2 PE 1 SV 1
blastp_uniprot_sprot sp|Q62193|RFA2_MOUSE 1 278 + 278 Gaps:33 98.89 270 33.33 5e-25 Replication protein A 32 kDa subunit OS Mus musculus GN Rpa2 PE 1 SV 1
blastp_uniprot_sprot sp|P15927|RFA2_HUMAN 30 278 + 249 Gaps:30 88.52 270 33.05 4e-24 Replication protein A 32 kDa subunit OS Homo sapiens GN RPA2 PE 1 SV 1
blastp_uniprot_sprot sp|Q5RC43|RFA2_PONAB 30 278 + 249 Gaps:30 88.52 270 32.64 1e-23 Replication protein A 32 kDa subunit OS Pongo abelii GN RPA2 PE 2 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 212 278 67 SSF46785 none none none
PIRSF 1 279 279 PIRSF036949 "Reactome:REACT_152","Reactome:REACT_383" none IPR014646
PANTHER 2 278 277 PTHR13989:SF14 none none none
Gene3D 38 168 131 G3DSA:2.40.50.140 none none IPR012340
Gene3D 212 278 67 G3DSA:1.10.10.10 none none IPR011991
Pfam 73 146 74 PF01336 none OB-fold nucleic acid binding domain IPR004365
PANTHER 2 278 277 PTHR13989 none none none
Pfam 184 272 89 PF08784 "Reactome:REACT_152","Reactome:REACT_383" Replication protein A C terminal IPR014892
SUPERFAMILY 42 166 125 SSF50249 none none IPR012340

0 Localization

0 Qtllist

0 Targeting