Protein : Qrob_P0667160.2 Q. robur
Protein Identifier  ? Qrob_P0667160.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) KOG2866 - Uncharacterized conserved protein [Function unknown]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 395  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0030915 Smc5-Smc6 complex A conserved complex that contains a heterodimer of SMC proteins (Smc5p and Smc6p, or homologs thereof) and several other proteins, and is involved in DNA repair and maintaining cell cycle arrest following DNA damage. In S. cerevisiae, this is an octameric complex called Mms21-Smc5-Smc6 complex, with at least five of its subunits conserved in fission yeast and humans.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103341842 3 393 + 391 Gaps:6 97.47 395 65.71 7e-169 non-structural maintenance of chromosomes element 4 homolog A
blastp_kegg lcl|pper:PRUPE_ppa006782mg 2 393 + 392 Gaps:8 98.23 395 65.72 1e-168 hypothetical protein
blastp_kegg lcl|pxb:103953996 4 393 + 390 Gaps:18 97.17 389 66.40 6e-167 non-structural maintenance of chromosomes element 4 homolog A
blastp_kegg lcl|pxb:103940969 4 393 + 390 Gaps:18 97.17 389 66.14 9e-166 non-structural maintenance of chromosomes element 4 homolog A-like
blastp_kegg lcl|mdm:103425160 4 393 + 390 Gaps:18 97.17 389 65.87 3e-164 non-structural maintenance of chromosomes element 4 homolog A-like
blastp_kegg lcl|mdm:103401558 4 393 + 390 Gaps:18 97.17 389 65.87 3e-164 non-structural maintenance of chromosomes element 4 homolog A-like
blastp_kegg lcl|cic:CICLE_v10015454mg 4 393 + 390 Gaps:16 96.79 405 61.73 5e-161 hypothetical protein
blastp_kegg lcl|cit:102609635 4 393 + 390 Gaps:16 96.79 405 61.73 5e-161 non-structural maintenance of chromosomes element 4 homolog A-like
blastp_kegg lcl|pxb:103963879 4 393 + 390 Gaps:18 97.17 389 63.76 7e-157 non-structural maintenance of chromosomes element 4 homolog A-like
blastp_kegg lcl|tcc:TCM_040402 15 394 + 380 Gaps:21 100.00 391 59.59 1e-154 Non-structural maintenance of chromosome element 4 putative isoform 2
blastp_uniprot_sprot sp|Q9C689|NSE4A_ARATH 10 393 + 384 Gaps:9 94.54 403 57.22 2e-137 Non-structural maintenance of chromosomes element 4 homolog A OS Arabidopsis thaliana GN NSE4A PE 2 SV 1
blastp_uniprot_sprot sp|F4JET1|NSE4B_ARATH 47 382 + 336 Gaps:21 83.29 383 53.92 1e-109 Non-structural maintenance of chromosomes element 4 homolog B OS Arabidopsis thaliana GN NSE4B PE 2 SV 1
blastp_uniprot_sprot sp|Q2TBI1|NSE4A_BOVIN 27 308 + 282 Gaps:28 77.49 382 26.01 3e-15 Non-structural maintenance of chromosomes element 4 homolog A OS Bos taurus GN NSMCE4A PE 2 SV 1
blastp_uniprot_sprot sp|Q6BDR8|NSE4_SCHPO 44 324 + 281 Gaps:12 95.00 300 25.26 1e-14 Non-structural maintenance of chromosome element 4 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN nse4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9NXX6|NSE4A_HUMAN 49 272 + 224 Gaps:22 62.86 385 27.27 7e-14 Non-structural maintenance of chromosomes element 4 homolog A OS Homo sapiens GN NSMCE4A PE 1 SV 2
blastp_uniprot_sprot sp|A6QPC8|EID3_BOVIN 49 308 + 260 Gaps:43 73.61 379 24.01 5e-10 EP300-interacting inhibitor of differentiation 3 OS Bos taurus GN EID3 PE 2 SV 1
blastp_uniprot_sprot sp|Q8N140|EID3_HUMAN 32 282 + 251 Gaps:35 84.68 333 24.82 9e-10 EP300-interacting inhibitor of differentiation 3 OS Homo sapiens GN EID3 PE 1 SV 1
blastp_uniprot_sprot sp|A5LFW4|EID3_MACFA 31 282 + 252 Gaps:33 75.74 371 23.49 1e-08 EP300-interacting inhibitor of differentiation 3 OS Macaca fascicularis GN EID3 PE 2 SV 1
blastp_uniprot_sprot sp|Q3V124|EID3_MOUSE 49 308 + 260 Gaps:26 74.13 375 22.66 7e-07 EP300-interacting inhibitor of differentiation 3 OS Mus musculus GN Eid3 PE 1 SV 1
rpsblast_cdd gnl|CDD|204049 47 324 + 278 Gaps:26 99.67 305 32.89 5e-61 pfam08743 Nse4 Nse4. Nse4 is a component of the Smc5/6 DNA repair complex. It forms interactions with Smc5 and Nse1.
rpsblast_cdd gnl|CDD|34726 174 314 + 141 Gaps:14 52.90 259 29.20 3e-10 COG5125 COG5125 Uncharacterized conserved protein [Function unknown].
rpsblast_kog gnl|CDD|38077 2 324 + 323 Gaps:20 93.70 349 36.09 7e-48 KOG2866 KOG2866 KOG2866 Uncharacterized conserved protein [Function unknown].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 233 324 92 PF08743 none Nse4 C-terminal IPR014854
PANTHER 5 377 373 PTHR16140 none none IPR027786
PANTHER 5 377 373 PTHR16140:SF0 none none none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting