Protein : Qrob_P0663920.2 Q. robur
Protein Identifier  ? Qrob_P0663920.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K12275 - translocation protein SEC62 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 370  
Kegg Orthology  K12275
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0015031 protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0008565 protein transporter activity Enables the directed movement of proteins into, out of or within a cell, or between cells.

16 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103935641 1 363 + 363 Gaps:7 94.93 375 83.71 0.0 uncharacterized LOC103935641
blastp_kegg lcl|pmum:103326842 1 363 + 363 Gaps:7 95.19 374 83.71 0.0 translocation protein sec62
blastp_kegg lcl|pxb:103963814 1 363 + 363 Gaps:7 94.93 375 83.43 0.0 uncharacterized LOC103963814
blastp_kegg lcl|mdm:103431671 1 363 + 363 Gaps:7 94.93 375 83.15 0.0 translocation protein sec62-like
blastp_kegg lcl|pper:PRUPE_ppa007283mg 1 363 + 363 Gaps:7 95.19 374 83.15 0.0 hypothetical protein
blastp_kegg lcl|cmo:103492034 1 367 + 367 Gaps:12 98.63 364 81.06 0.0 uncharacterized LOC103492034
blastp_kegg lcl|mdm:103407263 1 363 + 363 Gaps:7 94.93 375 82.02 0.0 translocation protein sec62-like
blastp_kegg lcl|mdm:103407556 1 363 + 363 Gaps:7 94.93 375 82.02 0.0 translocation protein sec62
blastp_kegg lcl|pxb:103955929 5 363 + 359 Gaps:7 86.27 408 82.67 0.0 uncharacterized LOC103955929
blastp_kegg lcl|fve:101294236 1 369 + 369 Gaps:16 100.00 367 79.02 0.0 translocation protein sec62-like
blastp_uniprot_sprot sp|O13787|SEC62_SCHPO 27 231 + 205 Gaps:19 74.73 273 26.96 3e-09 Translocation protein sec62 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN sec62 PE 3 SV 1
blastp_uniprot_sprot sp|Q99161|SEC62_YARLI 46 242 + 197 Gaps:17 52.02 396 25.73 5e-07 Translocation protein SEC62 OS Yarrowia lipolytica (strain CLIB 122 / E 150) GN SEC62 PE 3 SV 2
rpsblast_cdd gnl|CDD|34829 25 242 + 218 Gaps:26 88.03 259 21.93 2e-13 COG5232 SEC62 Preprotein translocase subunit Sec62 [Intracellular trafficking and secretion].
rpsblast_cdd gnl|CDD|162077 49 231 + 183 Gaps:15 82.76 232 26.56 4e-10 TIGR00869 sec62 protein translocation protein Sec62 family. Members of the NSCC2 family have been sequenced from various yeast fungal and animals species including Saccharomyces cerevisiae Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+ K+ and Cs+ with low permeability to Ca2+ and no permeability to anions.
rpsblast_cdd gnl|CDD|112643 66 243 + 178 Gaps:23 86.18 217 22.46 4e-08 pfam03839 Sec62 Translocation protein Sec62.
rpsblast_kog gnl|CDD|38138 1 345 + 345 Gaps:20 91.13 372 30.68 2e-62 KOG2927 KOG2927 KOG2927 Membrane component of ER protein translocation complex [Intracellular trafficking secretion and vesicular transport].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 187 218 32 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 219 256 38 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 163 181 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 257 274 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 8 367 360 PTHR12443:SF9 none none none
Phobius 1 162 162 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 182 186 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 8 367 360 PTHR12443 none none IPR004728
Pfam 120 236 117 PF03839 none Translocation protein Sec62 IPR004728
Phobius 275 369 95 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

3 Localization

Analysis Start End Length
TMHMM 253 270 17
TMHMM 159 181 22
TMHMM 188 210 22

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting