Protein : Qrob_P0663030.2 Q. robur
Protein Identifier  ? Qrob_P0663030.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PF03824 - High-affinity nickel-transport protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 301  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0046872 metal ion binding Interacting selectively and non-covalently with any metal ion.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0015099 nickel cation transmembrane transporter activity Enables the transfer of nickel (Ni) cations from one side of a membrane to the other.
GO:0035444 nickel cation transmembrane transport The directed movement of nickel (Ni) cations across a membrane by means of some agent such as a transporter or pore.

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101293334 21 300 + 280 none 73.30 382 86.43 2e-172 urease accessory protein UreH-like
blastp_kegg lcl|cic:CICLE_v10028645mg 18 300 + 283 none 73.70 384 89.40 3e-169 hypothetical protein
blastp_kegg lcl|cit:102625762 21 300 + 280 none 72.92 384 90.00 4e-169 hypothetical protein
blastp_kegg lcl|pmum:103334831 21 300 + 280 Gaps:1 72.47 385 86.74 2e-167 uncharacterized LOC103334831
blastp_kegg lcl|pmum:103341276 23 300 + 278 Gaps:1 72.70 381 84.12 4e-167 uncharacterized LOC103341276
blastp_kegg lcl|tcc:TCM_006611 22 300 + 279 none 69.06 404 86.02 6e-167 High-affinity nickel-transport family protein
blastp_kegg lcl|pper:PRUPE_ppa007041mg 21 300 + 280 Gaps:1 72.47 385 86.02 4e-166 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa007148mg 31 300 + 270 Gaps:1 70.79 380 85.50 5e-165 hypothetical protein
blastp_kegg lcl|cam:101510501 21 300 + 280 none 72.73 385 84.64 2e-164 uncharacterized LOC101510501
blastp_kegg lcl|vvi:100250325 21 300 + 280 none 73.30 382 83.93 6e-164 urease accessory protein UreH-like
blastp_uniprot_sprot sp|Q07404|UREH_BACSB 71 286 + 216 Gaps:19 90.79 228 29.47 9e-13 Urease accessory protein UreH OS Bacillus sp. (strain TB-90) GN ureH PE 3 SV 1
rpsblast_cdd gnl|CDD|112628 74 300 + 227 Gaps:53 100.00 278 20.50 3e-20 pfam03824 NicO High-affinity nickel-transport protein. High affinity nickel transporters involved in the incorporation of nickel into H2-uptake hydrogenase and urease enzymes. Essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Alcaligenes eutrophus is thought to be an integral membrane protein with seven transmembrane helices. The family also includes a cobalt transporter.

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 148 165 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 137 147 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 40 115 76 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 256 275 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 74 189 116 PF03824 none High-affinity nickel-transport protein IPR011541
Pfam 197 299 103 PF03824 none High-affinity nickel-transport protein IPR011541
Phobius 232 255 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 12 39 28 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 276 297 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 116 136 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 166 231 66 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 298 300 3 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 11 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

6 Localization

Analysis Start End Length
TMHMM 114 136 22
TMHMM 13 35 22
TMHMM 148 165 17
TMHMM 275 297 22
SignalP_GRAM_POSITIVE 1 46 45
TMHMM 233 255 22

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4

0 Targeting