Protein : Qrob_P0662330.2 Q. robur
Protein Identifier  ? Qrob_P0662330.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=1) K11844 - ubiquitin carboxyl-terminal hydrolase 16/45 [EC:3.1.2.15] Code Enzyme  EC:3.4.19.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1006  
Kegg Orthology  K11844
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0006511 ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO:0036459 ubiquitinyl hydrolase activity Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin.

49 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1019320 1 1005 + 1005 Gaps:39 100.00 1006 61.43 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_020316 1 1005 + 1005 Gaps:49 100.00 1028 59.92 0.0 Ubiquitin carboxyl-terminal hydrolase putative isoform 1
blastp_kegg lcl|cit:102615386 1 1005 + 1005 Gaps:63 100.00 1046 57.84 0.0 ubiquitin carboxyl-terminal hydrolase 2-like
blastp_kegg lcl|cic:CICLE_v10004226mg 1 1005 + 1005 Gaps:61 100.00 1042 57.01 0.0 hypothetical protein
blastp_kegg lcl|pmum:103324251 12 1004 + 993 Gaps:59 98.66 967 62.89 0.0 ubiquitin carboxyl-terminal hydrolase 2
blastp_kegg lcl|pper:PRUPEppa000917m1g 100 1004 + 905 Gaps:35 99.89 885 64.25 0.0 hypothetical protein
blastp_kegg lcl|mdm:103443472 1 1004 + 1004 Gaps:46 99.90 1023 58.41 0.0 ubiquitin carboxyl-terminal hydrolase 2
blastp_kegg lcl|pxb:103963488 1 1004 + 1004 Gaps:44 99.90 1023 58.41 0.0 ubiquitin carboxyl-terminal hydrolase 2
blastp_kegg lcl|gmx:100780952 1 1005 + 1005 Gaps:35 100.00 980 58.47 0.0 ubiquitin carboxyl-terminal hydrolase 2-like
blastp_kegg lcl|fve:101308859 1 1004 + 1004 Gaps:61 99.90 1008 57.10 0.0 ubiquitin carboxyl-terminal hydrolase 2-like
blastp_pdb 2hd5_A 230 1003 + 774 Gaps:45 85.79 359 37.34 8e-21 mol:protein length:359 Ubiquitin carboxyl-terminal hydrolase 2
blastp_pdb 3nhe_A 230 1003 + 774 Gaps:45 88.51 348 37.34 9e-21 mol:protein length:348 Ubiquitin carboxyl-terminal hydrolase 2
blastp_pdb 2ibi_A 230 1003 + 774 Gaps:45 78.07 374 38.70 1e-20 mol:protein length:374 Ubiquitin carboxyl-terminal hydrolase 2
blastp_pdb 2y6e_F 230 1004 + 775 Gaps:51 82.56 367 36.96 2e-17 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 2y6e_E 230 1004 + 775 Gaps:51 82.56 367 36.96 2e-17 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 2y6e_D 230 1004 + 775 Gaps:51 82.56 367 36.96 2e-17 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 2y6e_C 230 1004 + 775 Gaps:51 82.56 367 36.96 2e-17 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 2y6e_B 230 1004 + 775 Gaps:51 82.56 367 36.96 2e-17 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 2y6e_A 230 1004 + 775 Gaps:51 82.56 367 36.96 2e-17 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 3n3k_A 217 1005 + 789 Gaps:41 79.55 396 34.92 1e-15 mol:protein length:396 Ubiquitin carboxyl-terminal hydrolase 8
blastp_uniprot_sprot sp|Q8W4N3|UBP2_ARATH 1 1005 + 1005 Gaps:100 94.48 961 50.88 6e-175 Ubiquitin carboxyl-terminal hydrolase 2 OS Arabidopsis thaliana GN UBP2 PE 1 SV 2
blastp_uniprot_sprot sp|Q9FPT5|UBP1_ARATH 21 1005 + 985 Gaps:136 87.17 1083 44.70 8e-114 Ubiquitin carboxyl-terminal hydrolase 1 OS Arabidopsis thaliana GN UBP1 PE 1 SV 2
blastp_uniprot_sprot sp|Q99LG0|UBP16_MOUSE 50 1005 + 956 Gaps:95 67.03 825 32.37 2e-38 Ubiquitin carboxyl-terminal hydrolase 16 OS Mus musculus GN Usp16 PE 1 SV 2
blastp_uniprot_sprot sp|Q2KJ09|UBP16_RAT 50 1005 + 956 Gaps:87 62.11 826 33.14 2e-38 Ubiquitin carboxyl-terminal hydrolase 16 OS Rattus norvegicus GN Usp16 PE 2 SV 2
blastp_uniprot_sprot sp|Q0VA64|UBP16_XENTR 50 1005 + 956 Gaps:106 66.09 864 31.52 3e-38 Ubiquitin carboxyl-terminal hydrolase 16 OS Xenopus tropicalis GN usp16 PE 2 SV 2
blastp_uniprot_sprot sp|Q6PAW2|UBP16_XENLA 50 1005 + 956 Gaps:91 61.93 901 31.72 1e-37 Ubiquitin carboxyl-terminal hydrolase 16 OS Xenopus laevis GN usp16 PE 2 SV 1
blastp_uniprot_sprot sp|Q08DA3|UBP16_BOVIN 50 1005 + 956 Gaps:99 62.11 826 33.14 2e-37 Ubiquitin carboxyl-terminal hydrolase 16 OS Bos taurus GN USP16 PE 2 SV 2
blastp_uniprot_sprot sp|Q4R6X7|UBP16_MACFA 50 1005 + 956 Gaps:87 62.11 826 32.75 6e-36 Ubiquitin carboxyl-terminal hydrolase 16 OS Macaca fascicularis GN USP16 PE 2 SV 2
blastp_uniprot_sprot sp|Q9Y5T5|UBP16_HUMAN 50 1005 + 956 Gaps:87 62.33 823 32.75 3e-35 Ubiquitin carboxyl-terminal hydrolase 16 OS Homo sapiens GN USP16 PE 1 SV 1
blastp_uniprot_sprot sp|A8HAL1|UBP16_DANRE 50 1005 + 956 Gaps:100 64.29 815 34.35 7e-33 Ubiquitin carboxyl-terminal hydrolase 16 OS Danio rerio GN usp16 PE 3 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 228 390 163 SSF54001 none none none
SUPERFAMILY 872 1004 133 SSF54001 none none none
SUPERFAMILY 676 703 28 SSF54001 none none none
Pfam 74 162 89 PF02148 none Zn-finger in ubiquitin-hydrolases and other protein IPR001607
ProSitePatterns 936 953 18 PS00973 none Ubiquitin specific protease (USP) domain signature 2. IPR018200
SUPERFAMILY 48 169 122 SSF57850 none none none
Gene3D 48 174 127 G3DSA:3.30.40.10 none none IPR013083
ProSitePatterns 230 245 16 PS00972 none Ubiquitin specific protease (USP) domain signature 1. IPR018200
ProSiteProfiles 96 164 69 PS50271 none Zinc finger UBP-type profile. IPR001607
PANTHER 874 1005 132 PTHR24006 none none none
PANTHER 674 707 34 PTHR24006 none none none
PANTHER 109 384 276 PTHR24006 none none none
ProSiteProfiles 229 1005 777 PS50235 none Ubiquitin specific protease (USP) domain profile. IPR028889
SMART 99 152 54 SM00290 none Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger IPR001607
Pfam 229 1002 774 PF00443 none Ubiquitin carboxyl-terminal hydrolase IPR001394

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting