Protein : Qrob_P0662270.2 Q. robur
Protein Identifier  ? Qrob_P0662270.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) K00412 - ubiquinol-cytochrome c reductase cytochrome b subunit [EC:1.10.2.2] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 300  
Kegg Orthology  K00412
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0009055 electron carrier activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
GO:0022904 respiratory electron transport chain A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_Mp26 24 299 + 276 Gaps:34 78.88 393 76.13 9e-156 cob apocytochrome b
blastp_kegg lcl|eus:EUTSA_v10001270mg 24 299 + 276 Gaps:34 78.88 393 76.13 1e-155 hypothetical protein
blastp_kegg lcl|ath:ArthMp020 24 299 + 276 Gaps:34 78.88 393 76.13 1e-155 cob apocytochrome B
blastp_kegg lcl|ath:AT2G07727 24 299 + 276 Gaps:34 78.88 393 76.13 1e-155 cytochrome b
blastp_kegg lcl|mdm:13630213 24 299 + 276 Gaps:34 78.88 393 76.13 2e-155 cob C3258_p28 cob2
blastp_kegg lcl|cam:101512281 24 299 + 276 Gaps:34 79.08 392 75.16 1e-153 cytochrome b-like
blastp_kegg lcl|mtr:MTR_1g006200 24 299 + 276 Gaps:34 79.08 392 75.16 1e-153 Cytochrome b
blastp_kegg lcl|gmx:15308528 26 299 + 274 Gaps:34 78.97 390 74.68 5e-152 cob GlmaxMp09 apocytochrome b
blastp_kegg lcl|csv:11123888 24 299 + 276 Gaps:34 79.90 388 73.23 1e-151 cob CusaM_p07 apocytochrome b
blastp_kegg lcl|csv:101208597 24 299 + 276 Gaps:34 79.90 388 73.23 1e-151 COB cytochrome b-like
blastp_pdb 2ybb_C 35 291 + 257 Gaps:38 76.25 379 45.67 1e-74 mol:protein length:379 CYTOCHROME B
blastp_pdb 3cxh_N 40 298 + 259 Gaps:34 76.10 385 45.39 5e-76 mol:protein length:385 Cytochrome b
blastp_pdb 3cxh_C 40 298 + 259 Gaps:34 76.10 385 45.39 5e-76 mol:protein length:385 Cytochrome b
blastp_pdb 3cx5_N 40 298 + 259 Gaps:34 76.10 385 45.39 5e-76 mol:protein length:385 CYTOCHROME B
blastp_pdb 3cx5_C 40 298 + 259 Gaps:34 76.10 385 45.39 5e-76 mol:protein length:385 CYTOCHROME B
blastp_pdb 2ibz_C 40 298 + 259 Gaps:34 76.10 385 45.39 1e-75 mol:protein length:385 Cytochrome b
blastp_pdb 1p84_C 40 298 + 259 Gaps:34 76.10 385 45.39 1e-75 mol:protein length:385 cytochrome b
blastp_pdb 1kyo_N 40 298 + 259 Gaps:34 76.10 385 45.39 1e-75 mol:protein length:385 CYTOCHROME B
blastp_pdb 1kyo_C 40 298 + 259 Gaps:34 76.10 385 45.39 1e-75 mol:protein length:385 CYTOCHROME B
blastp_pdb 1kb9_C 40 298 + 259 Gaps:34 76.10 385 45.39 1e-75 mol:protein length:385 CYTOCHROME B
blastp_uniprot_sprot sp|P05718|CYB_VICFA 24 299 + 276 Gaps:34 79.08 392 75.16 5e-155 Cytochrome b OS Vicia faba GN MT-CYB PE 3 SV 2
blastp_uniprot_sprot sp|Q9ZZT8|CYB_PEA 24 299 + 276 Gaps:34 79.08 392 75.16 5e-155 Cytochrome b OS Pisum sativum GN MT-CYB PE 3 SV 1
blastp_uniprot_sprot sp|P42792|CYB_ARATH 24 299 + 276 Gaps:34 78.88 393 74.52 4e-153 Cytochrome b OS Arabidopsis thaliana GN MT-CYB PE 2 SV 2
blastp_uniprot_sprot sp|P29757|CYB_SOLTU 24 299 + 276 Gaps:34 78.88 393 73.87 1e-150 Cytochrome b OS Solanum tuberosum GN MT-CYB PE 1 SV 4
blastp_uniprot_sprot sp|P09843|CYB_OENBE 25 299 + 275 Gaps:34 78.43 394 74.11 5e-150 Cytochrome b OS Oenothera berteroana GN MT-CYB PE 2 SV 4
blastp_uniprot_sprot sp|P0C524|CYB_ORYSJ 24 299 + 276 Gaps:34 78.09 397 73.55 2e-149 Cytochrome b OS Oryza sativa subsp. japonica GN MT-CYB PE 2 SV 1
blastp_uniprot_sprot sp|P07747|CYB_WHEAT 24 299 + 276 Gaps:34 77.89 398 73.55 5e-149 Cytochrome b OS Triticum aestivum GN MT-CYB PE 2 SV 3
blastp_uniprot_sprot sp|P04165|CYB_MAIZE 24 299 + 276 Gaps:34 79.90 388 73.55 5e-148 Cytochrome b OS Zea mays GN MT-CYB PE 3 SV 2
blastp_uniprot_sprot sp|P0C523|CYB_ORYSI 24 299 + 276 Gaps:34 78.09 397 72.90 1e-146 Cytochrome b OS Oryza sativa subsp. indica GN MT-CYB PE 2 SV 1
blastp_uniprot_sprot sp|Q94S37|CYB_DAUCA 24 299 + 276 Gaps:34 77.89 398 70.00 1e-142 Cytochrome b OS Daucus carota GN MT-CYB PE 3 SV 1

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 28 222 195 PS51002 none Cytochrome b/b6 N-terminal region profile. IPR005797
Phobius 261 277 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 214 224 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 196 213 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 134 144 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 156 222 67 PF13631 none Cytochrome b(N-terminal)/b6/petB IPR005797
Phobius 225 241 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 257 298 42 SSF81648 none none IPR005798
ProSiteProfiles 206 299 94 PS51003 none Cytochrome b/b6 C-terminal region profile. IPR005798
Phobius 57 81 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 82 114 33 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 18 299 282 PTHR19271 none none none
Phobius 278 299 22 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 56 56 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 38 298 261 G3DSA:1.20.810.10 none none IPR027387
Pfam 255 297 43 PF00032 none Cytochrome b(C-terminal)/b6/petD IPR005798
Phobius 170 195 26 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 145 169 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 242 260 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 37 256 220 SSF81342 none none IPR016174
Phobius 115 133 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

6 Localization

Analysis Start End Length
TMHMM 226 248 22
TMHMM 147 169 22
TMHMM 113 135 22
TMHMM 173 192 19
TMHMM 197 216 19
TMHMM 57 79 22

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting