Protein : Qrob_P0656460.2 Q. robur
Protein Identifier  ? Qrob_P0656460.2 Organism . Name  Quercus robur
Score  2.0 Score Type  egn
Protein Description  (M=3) K14489 - arabidopsis histidine kinase 2/3/4 (cytokinin receptor) [EC:2.7.13.3] Code Enzyme  EC:2.7.13.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1327  
Kegg Orthology  K14489
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0007165 signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
GO:0016310 phosphorylation The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
GO:0016772 transferase activity, transferring phosphorus-containing groups Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
GO:0004871 signal transducer activity Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
GO:0000155 phosphorelay sensor kinase activity Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response.
GO:0000160 phosphorelay signal transduction system A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100263145 1 1264 + 1264 Gaps:14 99.37 1272 74.76 0.0 CYT1 histidine kinase 2-like
blastp_kegg lcl|tcc:TCM_002326 1 1281 + 1281 Gaps:8 97.64 1314 73.11 0.0 CHASE domain containing histidine kinase protein putative isoform 1
blastp_kegg lcl|pmum:103329273 1 1264 + 1264 Gaps:20 76.10 1661 73.50 0.0 histidine kinase 2-like
blastp_kegg lcl|pper:PRUPE_ppa000361mg 28 1264 + 1237 Gaps:20 99.36 1245 74.54 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0014s16260g 23 1264 + 1242 Gaps:48 99.59 1234 74.37 0.0 POPTRDRAFT_775135 hypothetical protein
blastp_kegg lcl|fve:101292285 28 1264 + 1237 Gaps:18 99.36 1243 73.85 0.0 histidine kinase 2-like
blastp_kegg lcl|fve:101305046 28 1264 + 1237 Gaps:34 99.35 1229 72.07 0.0 histidine kinase 2-like
blastp_kegg lcl|mdm:103405000 23 1264 + 1242 Gaps:77 99.35 1226 73.15 0.0 histidine kinase 2
blastp_kegg lcl|pxb:103955055 23 1264 + 1242 Gaps:64 99.35 1227 72.76 0.0 histidine kinase 2
blastp_kegg lcl|cic:CICLE_v10014068mg 28 1264 + 1237 Gaps:36 99.18 1223 70.73 0.0 hypothetical protein
blastp_pdb 3t4t_B 339 612 + 274 Gaps:15 97.41 270 68.06 2e-115 mol:protein length:270 Histidine kinase 4
blastp_pdb 3t4t_A 339 612 + 274 Gaps:15 97.41 270 68.06 2e-115 mol:protein length:270 Histidine kinase 4
blastp_pdb 3t4s_B 339 612 + 274 Gaps:15 97.41 270 68.06 2e-115 mol:protein length:270 Histidine kinase 4
blastp_pdb 3t4s_A 339 612 + 274 Gaps:15 97.41 270 68.06 2e-115 mol:protein length:270 Histidine kinase 4
blastp_pdb 3t4q_B 339 612 + 274 Gaps:15 97.41 270 68.06 2e-115 mol:protein length:270 Histidine kinase 4
blastp_pdb 3t4q_A 339 612 + 274 Gaps:15 97.41 270 68.06 2e-115 mol:protein length:270 Histidine kinase 4
blastp_pdb 3t4o_B 339 612 + 274 Gaps:15 97.41 270 68.06 2e-115 mol:protein length:270 Histidine kinase 4
blastp_pdb 3t4o_A 339 612 + 274 Gaps:15 97.41 270 68.06 2e-115 mol:protein length:270 Histidine kinase 4
blastp_pdb 3t4l_B 339 612 + 274 Gaps:15 97.41 270 68.06 2e-115 mol:protein length:270 Histidine kinase 4
blastp_pdb 3t4l_A 339 612 + 274 Gaps:15 97.41 270 68.06 2e-115 mol:protein length:270 Histidine kinase 4
blastp_uniprot_sprot sp|Q9C5U2|AHK2_ARATH 62 1264 + 1203 Gaps:94 96.85 1176 66.11 0.0 Histidine kinase 2 OS Arabidopsis thaliana GN AHK2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9C5U1|AHK3_ARATH 326 1262 + 937 Gaps:36 88.32 1036 60.98 0.0 Histidine kinase 3 OS Arabidopsis thaliana GN AHK3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9C5U0|AHK4_ARATH 312 1264 + 953 Gaps:55 86.85 1080 56.82 0.0 Histidine kinase 4 OS Arabidopsis thaliana GN AHK4 PE 1 SV 1
blastp_uniprot_sprot sp|Q54YZ9|DHKJ_DICDI 658 1295 + 638 Gaps:125 26.24 2062 39.37 3e-74 Hybrid signal transduction histidine kinase J OS Dictyostelium discoideum GN dhkJ PE 3 SV 2
blastp_uniprot_sprot sp|P48027|GACS_PSESY 660 1261 + 602 Gaps:137 55.68 907 37.03 3e-64 Sensor protein GacS OS Pseudomonas syringae pv. syringae GN gacS PE 3 SV 1
blastp_uniprot_sprot sp|P0AEC5|BARA_ECOLI 658 1263 + 606 Gaps:111 54.14 918 36.42 3e-60 Signal transduction histidine-protein kinase BarA OS Escherichia coli (strain K12) GN barA PE 1 SV 1
blastp_uniprot_sprot sp|P0AEC6|BARA_ECOL6 658 1263 + 606 Gaps:111 54.14 918 36.42 3e-60 Signal transduction histidine-protein kinase BarA OS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN barA PE 1 SV 1
blastp_uniprot_sprot sp|P0AEC7|BARA_ECO57 658 1263 + 606 Gaps:111 54.14 918 36.42 3e-60 Signal transduction histidine-protein kinase BarA OS Escherichia coli O157:H7 GN barA PE 3 SV 1
blastp_uniprot_sprot sp|P59342|BARA_SHIFL 658 1263 + 606 Gaps:111 54.14 918 36.62 6e-60 Signal transduction histidine-protein kinase BarA OS Shigella flexneri GN barA PE 3 SV 1
blastp_uniprot_sprot sp|Q86CZ2|DHKK_DICDI 624 1268 + 645 Gaps:71 35.28 1213 37.85 5e-46 Hybrid signal transduction histidine kinase K OS Dictyostelium discoideum GN dhkK PE 1 SV 1

44 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 971 1112 142 G3DSA:3.40.50.2300 none none none
Gene3D 1129 1264 136 G3DSA:3.40.50.2300 none none none
SUPERFAMILY 1129 1264 136 SSF52172 none none IPR011006
PRINTS 912 930 19 PR00344 none Bacterial sensor protein C-terminal signature IPR004358
PRINTS 936 949 14 PR00344 none Bacterial sensor protein C-terminal signature IPR004358
PRINTS 895 905 11 PR00344 none Bacterial sensor protein C-terminal signature IPR004358
PRINTS 877 891 15 PR00344 none Bacterial sensor protein C-terminal signature IPR004358
Phobius 1 66 66 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SMART 667 732 66 SM00388 none His Kinase A (phosphoacceptor) domain IPR003661
SMART 780 952 173 SM00387 none Histidine kinase-like ATPases IPR003594
PANTHER 872 1067 196 PTHR24423:SF363 none none none
Gene3D 660 717 58 G3DSA:1.10.287.130 none none IPR003661
Pfam 780 947 168 PF02518 none Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594
Pfam 1133 1264 132 PF00072 "Reactome:REACT_14797" Response regulator receiver domain IPR001789
Phobius 67 88 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 250 269 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 721 815 95 SSF55874 none none IPR003594
SUPERFAMILY 876 947 72 SSF55874 none none IPR003594
Phobius 615 638 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 718 815 98 G3DSA:3.30.565.10 none none IPR003594
Gene3D 876 947 72 G3DSA:3.30.565.10 none none IPR003594
ProSiteProfiles 1132 1269 138 PS50110 "Reactome:REACT_14797" Response regulatory domain profile. IPR001789
ProSiteProfiles 674 947 274 PS50109 "Reactome:REACT_1046" Histidine kinase domain profile. IPR005467
SUPERFAMILY 971 1107 137 SSF52172 none none IPR011006
Pfam 384 581 198 PF03924 none CHASE domain IPR006189
PANTHER 1224 1237 14 PTHR24423:SF363 none none none
Phobius 313 333 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1224 1237 14 PTHR24423 none none none
PANTHER 653 815 163 PTHR24423:SF363 none none none
PANTHER 417 424 8 PTHR24423:SF363 none none none

4 Localization

Analysis Start End Length
TMHMM 617 639 22
TMHMM 250 272 22
TMHMM 313 332 19
TMHMM 67 89 22

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting