Protein : Qrob_P0656370.2 Q. robur
Protein Identifier  ? Qrob_P0656370.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K10747 - DNA ligase 1 [EC:6.5.1.1] Code Enzyme  EC:6.5.1.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 790  
Kegg Orthology  K10747
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0006310 DNA recombination Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
GO:0003909 DNA ligase activity Catalysis of the formation of a phosphodiester bond between the 3'-hydroxyl group at the end of one DNA chain and the 5'-phosphate group at the end of another. This reaction requires an energy source such as ATP or NAD+.
GO:0051103 DNA ligation involved in DNA repair The re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase, that contributes to DNA repair.
GO:0003910 DNA ligase (ATP) activity Catalysis of the reaction: ATP + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + diphosphate + deoxyribonucleotide(n+m).
GO:0071897 DNA biosynthetic process The cellular DNA metabolic process resulting in the formation of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103326162 12 789 + 778 Gaps:10 97.59 789 76.88 0.0 DNA ligase 1-like
blastp_kegg lcl|pper:PRUPE_ppa001632mg 4 789 + 786 Gaps:18 98.61 789 76.86 0.0 hypothetical protein
blastp_kegg lcl|mdm:103423359 32 789 + 758 Gaps:17 95.60 796 77.53 0.0 DNA ligase 1-like
blastp_kegg lcl|pxb:103928628 38 789 + 752 Gaps:20 95.23 796 77.31 0.0 DNA ligase 1-like
blastp_kegg lcl|pxb:103937528 38 789 + 752 Gaps:20 95.23 796 77.18 0.0 DNA ligase 1-like
blastp_kegg lcl|cic:CICLE_v10027871mg 48 789 + 742 Gaps:32 99.73 754 76.06 0.0 hypothetical protein
blastp_kegg lcl|cit:102628869 36 789 + 754 Gaps:34 95.04 806 75.46 0.0 DNA ligase 1-like
blastp_kegg lcl|csv:101213447 29 789 + 761 Gaps:20 96.50 801 75.68 0.0 DNA ligase 1-like
blastp_kegg lcl|mdm:103448097 47 789 + 743 Gaps:13 100.00 732 76.09 0.0 DNA ligase 1
blastp_kegg lcl|cmo:103503033 34 789 + 756 Gaps:20 96.13 801 74.94 0.0 DNA ligase 1-like
blastp_pdb 1x9n_A 159 786 + 628 Gaps:13 92.88 688 48.36 0.0 mol:protein length:688 DNA ligase I
blastp_pdb 2hix_A 171 775 + 605 Gaps:35 95.01 621 34.24 2e-102 mol:protein length:621 Thermostable DNA ligase
blastp_pdb 2hiv_A 171 775 + 605 Gaps:35 95.01 621 34.24 2e-102 mol:protein length:621 Thermostable DNA ligase
blastp_pdb 3rr5_A 210 776 + 567 Gaps:60 91.40 570 35.70 5e-70 mol:protein length:570 DNA ligase
blastp_pdb 2cfm_A 176 776 + 601 Gaps:60 98.22 561 31.94 6e-65 mol:protein length:561 THERMOSTABLE DNA LIGASE
blastp_pdb 4eq5_A 198 777 + 580 Gaps:63 92.99 571 34.84 6e-61 mol:protein length:571 DNA ligase
blastp_pdb 3gde_A 213 775 + 563 Gaps:59 91.76 558 32.81 1e-56 mol:protein length:558 DNA ligase
blastp_pdb 3l2p_A 414 776 + 363 Gaps:41 61.14 579 32.77 9e-42 mol:protein length:579 DNA ligase 3
blastp_pdb 1vs0_B 415 761 + 347 Gaps:69 96.13 310 31.88 5e-14 mol:protein length:310 Putative DNA ligase-like protein Rv0938/MT096
blastp_pdb 1vs0_A 415 761 + 347 Gaps:69 96.13 310 31.88 5e-14 mol:protein length:310 Putative DNA ligase-like protein Rv0938/MT096
blastp_uniprot_sprot sp|Q42572|DNLI1_ARATH 21 789 + 769 Gaps:20 97.85 790 68.31 0.0 DNA ligase 1 OS Arabidopsis thaliana GN LIG1 PE 2 SV 2
blastp_uniprot_sprot sp|P51892|DNLI1_XENLA 160 777 + 618 Gaps:12 58.88 1070 50.95 0.0 DNA ligase 1 OS Xenopus laevis GN lig1 PE 2 SV 1
blastp_uniprot_sprot sp|Q869E1|DNLI1_DICDI 155 789 + 635 Gaps:13 54.36 1192 50.31 0.0 DNA ligase 1 OS Dictyostelium discoideum GN lig1 PE 3 SV 1
blastp_uniprot_sprot sp|P18858|DNLI1_HUMAN 159 786 + 628 Gaps:13 69.53 919 48.36 0.0 DNA ligase 1 OS Homo sapiens GN LIG1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9W1H4|DNLI1_DROME 95 775 + 681 Gaps:16 91.16 747 46.84 0.0 DNA ligase 1 OS Drosophila melanogaster GN DNA-ligI PE 1 SV 2
blastp_uniprot_sprot sp|P37913|DNLI1_MOUSE 83 773 + 691 Gaps:41 77.95 916 45.52 0.0 DNA ligase 1 OS Mus musculus GN Lig1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9JHY8|DNLI1_RAT 80 773 + 694 Gaps:41 78.10 918 45.05 0.0 DNA ligase 1 OS Rattus norvegicus GN Lig1 PE 2 SV 1
blastp_uniprot_sprot sp|P12000|DNLI1_SCHPO 28 775 + 748 Gaps:29 94.40 768 44.97 0.0 DNA ligase 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN cdc17 PE 3 SV 1
blastp_uniprot_sprot sp|Q27474|DNLI1_CAEEL 163 776 + 614 Gaps:5 79.30 773 47.47 0.0 DNA ligase 1 OS Caenorhabditis elegans GN lig-1 PE 3 SV 2
blastp_uniprot_sprot sp|P04819|DNLI1_YEAST 174 777 + 604 Gaps:7 80.40 755 45.47 0.0 DNA ligase 1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN CDC9 PE 1 SV 2

23 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 23 23 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 8 18 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Pfam 646 757 112 PF04679 "Reactome:REACT_216" ATP dependent DNA ligase C terminal region IPR012309
Gene3D 573 629 57 G3DSA:3.30.1490.70 none none none
Gene3D 420 446 27 G3DSA:3.30.1490.70 none none none
PANTHER 105 789 685 PTHR10459:SF10 none none none
SUPERFAMILY 159 408 250 SSF117018 "Reactome:REACT_216" none IPR012308
ProSiteProfiles 523 659 137 PS50160 "Reactome:REACT_216" ATP-dependent DNA ligase family profile. IPR012310
ProSitePatterns 595 621 27 PS00333 "Reactome:REACT_216" ATP-dependent DNA ligase signature 2. IPR016059
Pfam 417 621 205 PF01068 "Reactome:REACT_216" ATP dependent DNA ligase domain IPR012310
SUPERFAMILY 629 775 147 SSF50249 none none IPR012340
TIGRFAM 233 772 540 TIGR00574 "Reactome:REACT_216" dnl1: DNA ligase I, ATP-dependent (dnl1) IPR000977
Phobius 24 789 766 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Coils 136 157 22 Coil none none none
SUPERFAMILY 409 627 219 SSF56091 none none none
Gene3D 156 419 264 G3DSA:1.10.3260.10 "Reactome:REACT_216" none IPR012308
Pfam 174 351 178 PF04675 "Reactome:REACT_216" DNA ligase N terminus IPR012308
PANTHER 105 789 685 PTHR10459 none none none
ProSitePatterns 441 449 9 PS00697 "Reactome:REACT_216" ATP-dependent DNA ligase AMP-binding site. IPR016059
Phobius 19 23 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 7 7 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Gene3D 447 570 124 G3DSA:3.30.470.30 none none none
Gene3D 630 775 146 G3DSA:2.40.50.140 none none IPR012340

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 23 22

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting