Protein : Qrob_P0656000.2 Q. robur

Protein Identifier  ? Qrob_P0656000.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR31561:SF5 - 3-KETOACYL-COA SYNTHASE 5-RELATED (PTHR31561:SF5) Code Enzyme  EC:2.3.1.199
Gene Prediction Quality  validated Protein length 

Sequence

Length: 489  
Kegg Orthology  K15397

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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0006633 fatty acid biosynthetic process The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
GO:0008610 lipid biosynthetic process The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101310169 22 486 + 465 Gaps:1 98.31 474 71.46 0.0 3-ketoacyl-CoA synthase 6-like
blastp_kegg lcl|gmx:100818350 1 488 + 488 Gaps:13 100.00 481 71.93 0.0 3-ketoacyl-CoA synthase 6-like
blastp_kegg lcl|gmx:100813265 1 488 + 488 Gaps:7 94.52 511 71.43 0.0 3-ketoacyl-CoA synthase 5-like
blastp_kegg lcl|pmum:103333292 1 488 + 488 Gaps:5 99.80 494 68.97 0.0 3-ketoacyl-CoA synthase 5-like
blastp_kegg lcl|rcu:RCOM_1498540 1 488 + 488 Gaps:8 100.00 482 70.33 0.0 acyltransferase putative
blastp_kegg lcl|pop:POPTR_0015s14120g 1 484 + 484 Gaps:8 99.58 478 68.70 0.0 POPTRDRAFT_1102258 hypothetical protein
blastp_kegg lcl|cit:102628384 22 485 + 464 none 99.57 466 68.10 0.0 3-ketoacyl-CoA synthase 5-like
blastp_kegg lcl|cic:CICLE_v10006481mg 13 485 + 473 Gaps:2 96.74 491 67.37 0.0 hypothetical protein
blastp_kegg lcl|pxb:103940278 32 488 + 457 Gaps:2 99.78 460 69.06 0.0 3-ketoacyl-CoA synthase 5-like
blastp_kegg lcl|cmo:103484209 24 486 + 463 Gaps:8 96.62 473 71.33 0.0 3-ketoacyl-CoA synthase 5-like
blastp_pdb 1u0m_B 147 280 + 134 Gaps:7 34.29 382 29.77 7e-06 mol:protein length:382 putative polyketide synthase
blastp_pdb 1u0m_A 147 280 + 134 Gaps:7 34.29 382 29.77 7e-06 mol:protein length:382 putative polyketide synthase
blastp_uniprot_sprot sp|Q9C6L5|KCS5_ARATH 58 484 + 427 Gaps:1 86.59 492 50.94 5e-157 3-ketoacyl-CoA synthase 5 OS Arabidopsis thaliana GN KCS5 PE 1 SV 1
blastp_uniprot_sprot sp|Q9XF43|KCS6_ARATH 64 484 + 421 Gaps:3 84.91 497 50.47 8e-157 3-ketoacyl-CoA synthase 6 OS Arabidopsis thaliana GN CUT1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LN49|KCS4_ARATH 62 484 + 423 Gaps:2 81.98 516 46.57 8e-148 3-ketoacyl-CoA synthase 4 OS Arabidopsis thaliana GN KCS4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIX1|KCS9_ARATH 52 484 + 433 Gaps:1 84.38 512 44.44 2e-138 3-ketoacyl-CoA synthase 9 OS Arabidopsis thaliana GN KCS9 PE 2 SV 1
blastp_uniprot_sprot sp|O65677|KCS2_ARATH 61 484 + 424 Gaps:2 87.06 487 45.99 3e-138 Probable 3-ketoacyl-CoA synthase 2 OS Arabidopsis thaliana GN KCS2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9MAM3|KCS1_ARATH 65 487 + 423 Gaps:10 80.49 528 47.76 2e-136 3-ketoacyl-CoA synthase 1 OS Arabidopsis thaliana GN KCS1 PE 2 SV 1
blastp_uniprot_sprot sp|O48780|KCS11_ARATH 28 484 + 457 Gaps:8 90.96 509 43.63 5e-133 3-ketoacyl-CoA synthase 11 OS Arabidopsis thaliana GN KCS11 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C992|KCS7_ARATH 47 484 + 438 Gaps:3 95.00 460 45.77 3e-132 3-ketoacyl-CoA synthase 7 OS Arabidopsis thaliana GN KCS7 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZUZ0|KCS13_ARATH 59 484 + 426 Gaps:10 93.56 466 44.72 2e-128 3-ketoacyl-CoA synthase 13 OS Arabidopsis thaliana GN HIC PE 2 SV 1
blastp_uniprot_sprot sp|Q38860|KCS18_ARATH 63 484 + 422 Gaps:16 85.38 506 44.68 3e-128 3-ketoacyl-CoA synthase 18 OS Arabidopsis thaliana GN FAE1 PE 1 SV 1
rpsblast_cdd gnl|CDD|166018 12 487 + 476 Gaps:19 98.21 502 44.42 1e-128 PLN02377 PLN02377 3-ketoacyl-CoA synthase.
rpsblast_cdd gnl|CDD|166495 65 484 + 420 Gaps:2 81.00 521 48.82 1e-126 PLN02854 PLN02854 3-ketoacyl-CoA synthase.
rpsblast_cdd gnl|CDD|165836 28 484 + 457 Gaps:8 90.61 511 46.00 1e-120 PLN02192 PLN02192 3-ketoacyl-CoA synthase.
rpsblast_cdd gnl|CDD|116972 76 364 + 289 none 99.66 290 48.79 1e-115 pfam08392 FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein. The members of this family are described as 3-ketoacyl-CoA synthases type III polyketide synthases fatty acid elongases and fatty acid condensing enzymes and are found in both prokaryotic and eukaryotic (mainly plant) species. The region featured in this family contains the active site residues as well as motifs involved in substrate binding.
rpsblast_cdd gnl|CDD|178520 53 484 + 432 Gaps:12 90.38 478 45.37 1e-112 PLN02932 PLN02932 3-ketoacyl-CoA synthase.
rpsblast_cdd gnl|CDD|177808 30 484 + 455 Gaps:18 99.36 466 43.84 1e-108 PLN00415 PLN00415 3-ketoacyl-CoA synthase.
rpsblast_cdd gnl|CDD|29418 66 460 + 395 Gaps:37 99.72 361 35.00 1e-71 cd00831 CHS_like Chalcone and stilbene synthases plant-specific polyketide synthases (PKS) and related enzymes also called type III PKSs. PKS generate an array of different products dependent on the nature of the starter molecule. They share a common chemical strategy after the starter molecule is loaded onto the active site cysteine a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs using coenzyme A esters to deliver substrate to the active site but they differ in the choice of starter molecule and the number of condensation reactions..
rpsblast_cdd gnl|CDD|33230 108 452 + 345 Gaps:46 89.04 356 23.66 4e-18 COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis transport and catabolism].

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PIRSF 8 488 481 PIRSF036417 "KEGG:00062+2.3.1.199","MetaCyc:PWY-5080","MetaCyc:PWY-5972","MetaCyc:PWY-6433","MetaCyc:PWY-6598","MetaCyc:PWY-7036","MetaCyc:PWY-7601","MetaCyc:PWY-7602","MetaCyc:PWY-7619","UniPathway:UPA00094" none IPR012392
SUPERFAMILY 373 464 92 SSF53901 none none IPR016039
SUPERFAMILY 268 345 78 SSF53901 none none IPR016039
SUPERFAMILY 70 283 214 SSF53901 none none IPR016039
PANTHER 61 485 425 PTHR31561 "KEGG:00062+2.3.1.199","MetaCyc:PWY-5080","MetaCyc:PWY-5972","MetaCyc:PWY-6433","MetaCyc:PWY-6598","MetaCyc:PWY-7036","MetaCyc:PWY-7601","MetaCyc:PWY-7602","MetaCyc:PWY-7619","UniPathway:UPA00094";signature_desc=FAMILY NOT NAMED none IPR012392
Phobius 1 29 29 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 78 281 204 G3DSA:3.40.47.10 none none IPR016038
Phobius 30 52 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 78 488 411 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 61 485 425 PTHR31561:SF5 none none none
Phobius 58 77 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 77 363 287 PF08392 "KEGG:00062+2.3.1.199","MetaCyc:PWY-5080","MetaCyc:PWY-5972","MetaCyc:PWY-6433","MetaCyc:PWY-6598","MetaCyc:PWY-7036","MetaCyc:PWY-7601","MetaCyc:PWY-7602","MetaCyc:PWY-7619","UniPathway:UPA00094" FAE1/Type III polyketide synthase-like protein IPR013601
Gene3D 291 464 174 G3DSA:3.40.47.10 none none IPR016038
Phobius 53 57 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 380 461 82 PF08541 "KEGG:00061+2.3.1.180","MetaCyc:PWY-4381","UniPathway:UPA00094" 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IPR013747

2 Localization

Analysis Start End Length
TMHMM 30 52 22
TMHMM 59 78 19

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4

0 Targeting