Protein : Qrob_P0655720.2 Q. robur
Protein Identifier  ? Qrob_P0655720.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K08498 - syntaxin 6 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 179  
Kegg Orthology  K08498
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0048193 Golgi vesicle transport The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100257700 1 159 + 159 none 64.37 247 78.62 1e-88 syntaxin-61-like
blastp_kegg lcl|pop:POPTR_0004s05020g 1 159 + 159 Gaps:1 64.23 246 79.75 7e-87 POPTRDRAFT_817835 Syntaxin 61 family protein
blastp_kegg lcl|pper:PRUPE_ppa010587mg 1 159 + 159 Gaps:3 63.93 244 81.41 1e-86 hypothetical protein
blastp_kegg lcl|pxb:103931018 1 159 + 159 Gaps:3 63.93 244 82.05 6e-86 syntaxin-61-like
blastp_kegg lcl|pop:POPTR_0011s05870g 1 159 + 159 Gaps:1 64.23 246 79.11 7e-86 Syntaxin 61 family protein
blastp_kegg lcl|pmum:103326449 1 159 + 159 Gaps:3 63.93 244 80.77 8e-86 syntaxin-61
blastp_kegg lcl|sly:101246033 1 159 + 159 none 64.37 247 76.10 3e-85 syntaxin-61-like
blastp_kegg lcl|sot:102593749 1 159 + 159 none 64.37 247 76.10 4e-85 syntaxin-61-like
blastp_kegg lcl|tcc:TCM_029787 1 159 + 159 Gaps:4 63.79 243 79.35 2e-84 Syntaxin of plants 61
blastp_kegg lcl|pxb:103951361 1 159 + 159 Gaps:3 63.93 244 80.77 2e-84 syntaxin-61-like
blastp_pdb 1lvf_B 3 105 + 103 Gaps:5 98.18 110 32.41 1e-13 mol:protein length:110 syntaxin 6
blastp_pdb 1lvf_A 3 105 + 103 Gaps:5 98.18 110 32.41 1e-13 mol:protein length:110 syntaxin 6
blastp_pdb 4dnd_A 3 99 + 97 Gaps:5 78.46 130 27.45 2e-08 mol:protein length:130 Syntaxin-10
blastp_uniprot_sprot sp|Q946Y7|SYP61_ARATH 1 159 + 159 Gaps:2 64.08 245 67.52 7e-70 Syntaxin-61 OS Arabidopsis thaliana GN SYP61 PE 1 SV 1
blastp_uniprot_sprot sp|Q9JKK1|STX6_MOUSE 3 163 + 161 Gaps:17 60.39 255 31.17 6e-13 Syntaxin-6 OS Mus musculus GN Stx6 PE 1 SV 1
blastp_uniprot_sprot sp|Q5R6Q2|STX6_PONAB 3 158 + 156 Gaps:35 68.63 255 29.71 1e-12 Syntaxin-6 OS Pongo abelii GN STX6 PE 2 SV 1
blastp_uniprot_sprot sp|O43752|STX6_HUMAN 3 158 + 156 Gaps:35 68.63 255 29.71 1e-12 Syntaxin-6 OS Homo sapiens GN STX6 PE 1 SV 1
blastp_uniprot_sprot sp|Q63635|STX6_RAT 3 163 + 161 Gaps:17 60.39 255 30.52 1e-12 Syntaxin-6 OS Rattus norvegicus GN Stx6 PE 1 SV 1
blastp_uniprot_sprot sp|Q5ZL19|STX6_CHICK 3 99 + 97 Gaps:5 40.16 254 34.31 8e-12 Syntaxin-6 OS Gallus gallus GN STX6 PE 2 SV 1
blastp_uniprot_sprot sp|O60499|STX10_HUMAN 3 158 + 156 Gaps:13 67.87 249 23.67 1e-07 Syntaxin-10 OS Homo sapiens GN STX10 PE 1 SV 1
rpsblast_cdd gnl|CDD|192222 6 99 + 94 Gaps:2 100.00 96 42.71 1e-27 pfam09177 Syntaxin-6_N Syntaxin 6 N-terminal. Members of this family which are found in the amino terminus of various SNARE proteins adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined though it is known that they regulate the SNARE motif as well as mediate various protein-protein interactions involved in membrane-transport.
rpsblast_kog gnl|CDD|38412 1 159 + 159 Gaps:13 62.98 235 27.70 4e-18 KOG3202 KOG3202 KOG3202 SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking secretion and vesicular transport].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 6 99 94 PF09177 "Reactome:REACT_11184" Syntaxin 6, N-terminal IPR015260
SUPERFAMILY 5 102 98 SSF47661 none none IPR010989
PANTHER 3 159 157 PTHR12380 none none none
Gene3D 3 103 101 G3DSA:1.20.58.90 none none none
Coils 12 33 22 Coil none none none
PANTHER 3 159 157 PTHR12380:SF47 none none none

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting