Protein : Qrob_P0646930.2 Q. robur
Protein Identifier  ? Qrob_P0646930.2 Organism . Name  Quercus robur
Protein Description  (M=1) KOG4592 - Uncharacterized conserved protein [Function unknown]. Alias (in v1)  Qrob_P0768550.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 1132  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0009725 response to hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100815277 1 1131 + 1131 Gaps:27 100.00 1122 77.90 0.0 auxin response factor 19-like
blastp_kegg lcl|mtr:MTR_4g124900 1 1131 + 1131 Gaps:33 100.00 1120 76.34 0.0 Auxin response factor
blastp_kegg lcl|ath:AT1G19220 1 1131 + 1131 Gaps:97 100.00 1086 67.96 0.0 ARF19 auxin response factor 19
blastp_kegg lcl|aly:ARALYDRAFT_335174 1 1131 + 1131 Gaps:125 100.00 1096 65.33 0.0 hypothetical protein
blastp_kegg lcl|pxb:103950246 1 610 + 610 Gaps:2 54.87 1108 82.73 0.0 auxin response factor 19
blastp_kegg lcl|vvi:100257618 1 647 + 647 Gaps:13 58.67 1084 83.49 0.0 auxin response factor 19-like
blastp_kegg lcl|mus:103986681 11 1130 + 1120 Gaps:181 98.63 1092 57.20 0.0 auxin response factor 19-like isoform X1
blastp_kegg lcl|gmx:100804628 1 612 + 612 Gaps:13 54.67 1125 81.95 0.0 auxin response factor 19-like
blastp_kegg lcl|tcc:TCM_037484 1 492 + 492 Gaps:1 42.88 1145 93.28 0.0 Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related isoform 1
blastp_kegg lcl|mdm:103400912 1 504 + 504 Gaps:1 43.91 1150 89.50 0.0 auxin response factor 19-like
blastp_pdb 1wid_A 125 241 + 117 none 90.00 130 33.33 3e-08 mol:protein length:130 DNA-binding protein RAV1
blastp_uniprot_sprot sp|Q8RYC8|ARFS_ARATH 1 1131 + 1131 Gaps:97 100.00 1086 67.96 0.0 Auxin response factor 19 OS Arabidopsis thaliana GN ARF19 PE 1 SV 2
blastp_uniprot_sprot sp|P93022|ARFG_ARATH 1 488 + 488 Gaps:11 42.35 1164 81.54 0.0 Auxin response factor 7 OS Arabidopsis thaliana GN ARF7 PE 1 SV 2
blastp_uniprot_sprot sp|A3B9A0|ARFP_ORYSJ 6 1119 + 1114 Gaps:14 78.58 1055 71.05 0.0 Auxin response factor 16 OS Oryza sativa subsp. japonica GN ARF16 PE 2 SV 1
blastp_uniprot_sprot sp|A2YAA5|ARFP_ORYSI 6 1119 + 1114 Gaps:14 78.58 1055 70.93 0.0 Auxin response factor 16 OS Oryza sativa subsp. indica GN ARF16 PE 2 SV 1
blastp_uniprot_sprot sp|Q6Z2W3|ARFE_ORYSJ 14 551 + 538 Gaps:21 47.20 1142 69.39 0.0 Auxin response factor 5 OS Oryza sativa subsp. japonica GN ARF5 PE 2 SV 2
blastp_uniprot_sprot sp|Q0D9R7|ARFS_ORYSJ 14 1123 + 1110 Gaps:77 80.79 1161 58.42 0.0 Auxin response factor 19 OS Oryza sativa subsp. japonica GN ARF19 PE 2 SV 2
blastp_uniprot_sprot sp|Q6YZW0|ARFU_ORYSJ 20 510 + 491 Gaps:17 45.16 1116 66.47 0.0 Auxin response factor 21 OS Oryza sativa subsp. japonica GN ARF21 PE 2 SV 2
blastp_uniprot_sprot sp|Q9ZTX8|ARFF_ARATH 1 1097 + 1097 Gaps:19 57.33 935 66.60 0.0 Auxin response factor 6 OS Arabidopsis thaliana GN ARF6 PE 1 SV 2
blastp_uniprot_sprot sp|Q6H6V4|ARFF_ORYSJ 16 1097 + 1082 Gaps:54 79.52 908 55.68 0.0 Auxin response factor 6 OS Oryza sativa subsp. japonica GN ARF6 PE 1 SV 1
blastp_uniprot_sprot sp|A2X1A1|ARFF_ORYSI 16 1097 + 1082 Gaps:54 79.52 908 55.68 0.0 Auxin response factor 6 OS Oryza sativa subsp. indica GN ARF6 PE 3 SV 1
rpsblast_cdd gnl|CDD|191545 252 334 + 83 none 100.00 83 66.27 3e-40 pfam06507 Auxin_resp Auxin response factor. A conserved region of auxin-responsive transcription factors.
rpsblast_cdd gnl|CDD|202217 126 228 + 103 Gaps:6 100.00 97 38.14 2e-23 pfam02362 B3 B3 DNA binding domain. This is a family of plant transcription factors with various roles in development the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by.
rpsblast_cdd gnl|CDD|202200 1006 1095 + 90 Gaps:6 51.06 188 33.33 2e-22 pfam02309 AUX_IAA AUX/IAA family. Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain.
rpsblast_cdd gnl|CDD|198087 126 227 + 102 Gaps:6 100.00 96 40.62 3e-22 smart01019 B3 B3 DNA binding domain. Two DNA binding proteins RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors while the C-terminal region exhibits homology to the highly conserved C-terminal domain designated B3 of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs respectively and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations.
rpsblast_cdd gnl|CDD|204310 451 793 + 343 Gaps:97 33.21 804 52.81 2e-19 pfam09770 PAT1 Topoisomerase II-associated protein PAT1. Members of this family are necessary for accurate chromosome transmission during cell division.
rpsblast_cdd gnl|CDD|197383 125 226 + 102 Gaps:7 98.98 98 31.96 7e-17 cd10017 B3_DNA Plant-specific B3-DNA binding domain. The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development while other members of the LAV family seem to have a more general role being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain they activate or repress transcription. RAV and REM families are less studied B3 protein famillies.
rpsblast_cdd gnl|CDD|205952 492 748 + 257 Gaps:277 34.39 820 35.82 1e-16 pfam13779 DUF4175 Domain of unknown function (DUF4175).
rpsblast_cdd gnl|CDD|150314 461 752 + 292 Gaps:59 49.74 768 37.43 8e-16 pfam09606 Med15 ARC105 or Med15 subunit of Mediator complex non-fungal. The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition Med15 is a critical transducer of gene activation signals that control early metazoan development.
rpsblast_cdd gnl|CDD|183073 457 743 + 287 Gaps:64 27.22 1113 20.79 6e-10 PRK11281 PRK11281 hypothetical protein Provisional.

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 587 587 PTHR31384 none none none
Pfam 999 1094 96 PF02309 none AUX/IAA family IPR003311
ProSiteProfiles 1005 1098 94 PS51745 none PB1 domain profile. IPR000270
PANTHER 909 1128 220 PTHR31384 none none none
PANTHER 909 1128 220 PTHR31384:SF9 none none none
SUPERFAMILY 1018 1083 66 SSF54277 none none none
Pfam 126 227 102 PF02362 none B3 DNA binding domain IPR003340
PANTHER 1 587 587 PTHR31384:SF9 none none none
Gene3D 118 241 124 G3DSA:2.40.330.10 none none IPR015300
ProSiteProfiles 126 228 103 PS50863 none B3 DNA-binding domain profile. IPR003340
SMART 126 228 103 SM01019 none B3 DNA binding domain IPR003340
Pfam 252 334 83 PF06507 none Auxin response factor IPR010525
Coils 505 526 22 Coil none none none
Coils 677 698 22 Coil none none none
SUPERFAMILY 116 255 140 SSF101936 none none IPR015300
PANTHER 618 691 74 PTHR31384 none none none
PANTHER 618 691 74 PTHR31384:SF9 none none none

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting