Protein : Qrob_P0633220.2 Q. robur
Protein Identifier  ? Qrob_P0633220.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=7) PTHR10071//PTHR10071:SF161 - TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR) // SUBFAMILY NOT NAMED (PTHR10071:SF161) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 384  
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0045893 positive regulation of transcription, DNA-templated Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0006s25410g 1 383 + 383 Gaps:54 100.00 357 71.43 7e-151 POPTRDRAFT_802380 zinc finger family protein
blastp_kegg lcl|cic:CICLE_v10008690mg 1 383 + 383 Gaps:45 100.00 372 66.67 3e-150 hypothetical protein
blastp_kegg lcl|mdm:103456012 1 383 + 383 Gaps:43 100.00 374 69.25 2e-149 GATA transcription factor 12-like
blastp_kegg lcl|cit:102630652 1 383 + 383 Gaps:45 100.00 372 66.40 6e-148 GATA transcription factor 12-like
blastp_kegg lcl|pper:PRUPE_ppa015753mg 1 383 + 383 Gaps:65 100.00 384 68.49 7e-145 hypothetical protein
blastp_kegg lcl|vvi:100266300 1 383 + 383 Gaps:55 100.00 342 72.81 5e-143 GATA transcription factor 9-like
blastp_kegg lcl|pmum:103320223 1 383 + 383 Gaps:34 100.00 385 68.05 2e-142 GATA transcription factor 12
blastp_kegg lcl|mdm:103441153 1 383 + 383 Gaps:39 100.00 374 68.45 8e-141 GATA transcription factor 12-like
blastp_kegg lcl|tcc:TCM_037205 1 383 + 383 Gaps:54 100.00 363 66.67 1e-140 GATA transcription factor 9 putative
blastp_kegg lcl|fve:101299441 1 383 + 383 Gaps:34 100.00 381 66.67 1e-133 GATA transcription factor 12-like
blastp_uniprot_sprot sp|P69781|GAT12_ARATH 36 383 + 348 Gaps:70 96.07 331 60.06 9e-96 GATA transcription factor 12 OS Arabidopsis thaliana GN GATA12 PE 2 SV 1
blastp_uniprot_sprot sp|O82632|GATA9_ARATH 30 383 + 354 Gaps:69 96.43 308 55.89 1e-86 GATA transcription factor 9 OS Arabidopsis thaliana GN GATA9 PE 2 SV 1
blastp_uniprot_sprot sp|O49743|GATA4_ARATH 105 321 + 217 Gaps:54 68.75 240 63.64 1e-49 GATA transcription factor 4 OS Arabidopsis thaliana GN GATA4 PE 2 SV 1
blastp_uniprot_sprot sp|O49741|GATA2_ARATH 105 324 + 220 Gaps:39 70.83 264 54.01 5e-48 GATA transcription factor 2 OS Arabidopsis thaliana GN GATA2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FH57|GATA5_ARATH 82 321 + 240 Gaps:46 68.44 339 47.41 9e-40 GATA transcription factor 5 OS Arabidopsis thaliana GN GATA5 PE 2 SV 1
blastp_uniprot_sprot sp|O65515|GATA7_ARATH 33 320 + 288 Gaps:83 93.70 238 49.78 1e-34 GATA transcription factor 7 OS Arabidopsis thaliana GN GATA7 PE 2 SV 1
blastp_uniprot_sprot sp|Q8LAU9|GATA1_ARATH 231 319 + 89 Gaps:8 29.56 274 72.84 1e-31 GATA transcription factor 1 OS Arabidopsis thaliana GN GATA1 PE 2 SV 2
blastp_uniprot_sprot sp|Q6DBP8|GAT11_ARATH 176 319 + 144 Gaps:2 47.52 303 47.92 3e-31 GATA transcription factor 11 OS Arabidopsis thaliana GN GATA11 PE 2 SV 1
blastp_uniprot_sprot sp|Q8L4M6|GATA3_ARATH 103 322 + 220 Gaps:61 64.31 269 49.71 9e-31 GATA transcription factor 3 OS Arabidopsis thaliana GN GATA3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SV30|GATA8_ARATH 253 320 + 68 none 21.12 322 76.47 4e-30 GATA transcription factor 8 OS Arabidopsis thaliana GN GATA8 PE 2 SV 1
rpsblast_cdd gnl|CDD|197702 252 299 + 48 Gaps:2 96.15 52 48.00 9e-12 smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
rpsblast_cdd gnl|CDD|109380 255 290 + 36 none 100.00 36 55.56 1e-10 pfam00320 GATA GATA zinc finger. This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain.
rpsblast_cdd gnl|CDD|29259 254 301 + 48 Gaps:3 83.33 54 44.44 6e-09 cd00202 ZnF_GATA Zinc finger DNA binding domain binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements a subset of family members may also bind protein zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C.
rpsblast_kog gnl|CDD|36814 105 347 + 243 Gaps:12 69.71 340 24.05 1e-10 KOG1601 KOG1601 KOG1601 GATA-4/5/6 transcription factors [Transcription].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 247 328 82 PTHR10071:SF161 none none none
PANTHER 18 25 8 PTHR10071:SF161 none none none
SMART 249 299 51 SM00401 none zinc finger binding to DNA consensus sequence [AT]GATA[AG] IPR000679
ProSitePatterns 255 280 26 PS00344 none GATA-type zinc finger domain. IPR000679
Gene3D 251 286 36 G3DSA:3.30.50.10 none none IPR013088
ProSiteProfiles 249 285 37 PS50114 none GATA-type zinc finger domain profile. IPR000679
PANTHER 247 328 82 PTHR10071 none none none
PANTHER 18 25 8 PTHR10071 none none none
SUPERFAMILY 251 313 63 SSF57716 none none none
Pfam 255 289 35 PF00320 none GATA zinc finger IPR000679
PIRSF 19 347 329 PIRSF016992 none none IPR016679

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4

0 Targeting