Protein : Qrob_P0629500.2 Q. robur
Protein Identifier  ? Qrob_P0629500.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR11777:SF7 - ALANYL-TRNA SYNTHETASE RELATED Code Enzyme  EC:6.1.1.7
Gene Prediction Quality  validated Protein length 

Sequence

Length: 258  
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004813 alanine-tRNA ligase activity Catalysis of the reaction: ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-tRNA(Ala).
GO:0006419 alanyl-tRNA aminoacylation The process of coupling alanine to alanyl-tRNA, catalyzed by alanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO:0016876 ligase activity, forming aminoacyl-tRNA and related compounds Catalysis of the joining of an amino acid and a nucleic acid (usually tRNA) or poly(ribitol phosphate), with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. The reaction forms an aminoacyl-tRNA or a related compound.
GO:0043039 tRNA aminoacylation The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102620033 2 257 + 256 Gaps:1 98.84 258 77.25 2e-139 alanine--tRNA ligase mitochondrial-like
blastp_kegg lcl|vvi:100244170 1 257 + 257 Gaps:1 100.00 256 74.61 1e-136 alanyl-tRNA editing protein AlaX-L-like
blastp_kegg lcl|pper:PRUPE_ppa010207mg 3 257 + 255 Gaps:1 98.07 259 75.98 6e-136 hypothetical protein
blastp_kegg lcl|tcc:TCM_021201 3 257 + 255 Gaps:1 98.83 257 70.87 3e-130 Alanine-tRNA ligases nucleic acid binding ligases forming aminoacyl-tRNA and related compounds nucleotide binding ATP binding isoform 1
blastp_kegg lcl|pxb:103943646 5 256 + 252 Gaps:1 97.29 258 71.31 2e-128 probable alanine--tRNA ligase chloroplastic
blastp_kegg lcl|mtr:MTR_4g119840 1 257 + 257 Gaps:1 99.22 258 71.88 6e-128 Alanyl-tRNA synthetase
blastp_kegg lcl|mdm:103414606 5 256 + 252 Gaps:1 97.29 258 70.92 6e-126 probable alanine--tRNA ligase chloroplastic
blastp_kegg lcl|mdm:103452913 5 256 + 252 Gaps:1 97.29 258 70.92 6e-126 probable alanine--tRNA ligase chloroplastic
blastp_kegg lcl|fve:101306421 3 256 + 254 Gaps:1 98.44 257 67.19 8e-125 alanyl-tRNA editing protein AlaX-L-like
blastp_kegg lcl|gmx:100781401 1 257 + 257 Gaps:2 98.09 262 70.04 2e-124 alanyl-tRNA editing protein AlaX-L-like
blastp_pdb 2zzg_B 2 257 + 256 Gaps:25 32.05 752 29.46 3e-17 mol:protein length:752 Alanyl-tRNA synthetase
blastp_pdb 2zzg_A 2 257 + 256 Gaps:25 32.05 752 29.46 3e-17 mol:protein length:752 Alanyl-tRNA synthetase
blastp_pdb 2zzf_A 2 257 + 256 Gaps:25 32.05 752 29.46 3e-17 mol:protein length:752 Alanyl-tRNA synthetase
blastp_pdb 2zze_B 2 257 + 256 Gaps:25 32.05 752 29.46 3e-17 mol:protein length:752 Alanyl-tRNA synthetase
blastp_pdb 2zze_A 2 257 + 256 Gaps:25 32.05 752 29.46 3e-17 mol:protein length:752 Alanyl-tRNA synthetase
blastp_pdb 2ztg_A 5 244 + 240 Gaps:22 30.04 739 33.33 2e-14 mol:protein length:739 Alanyl-tRNA synthetase
blastp_pdb 2e1b_A 15 238 + 224 Gaps:42 88.89 216 36.98 7e-14 mol:protein length:216 216aa long hypothetical alanyl-tRNA synthetas
blastp_uniprot_sprot sp|O57734|ALAXL_PYRHO 30 256 + 227 Gaps:18 52.72 404 36.62 2e-25 Alanyl-tRNA editing protein AlaX-L OS Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN alaXL PE 3 SV 1
blastp_uniprot_sprot sp|Q46CS0|SYA_METBF 6 256 + 251 Gaps:23 25.79 923 32.77 6e-23 Alanine--tRNA ligase OS Methanosarcina barkeri (strain Fusaro / DSM 804) GN alaS PE 3 SV 1
blastp_uniprot_sprot sp|Q8TU79|SYA_METAC 6 256 + 251 Gaps:23 25.73 925 34.45 7e-23 Alanine--tRNA ligase OS Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN alaS PE 3 SV 1
blastp_uniprot_sprot sp|Q8PWU0|SYA_METMA 6 257 + 252 Gaps:23 25.81 926 33.05 1e-22 Alanine--tRNA ligase OS Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN alaS PE 3 SV 1
blastp_uniprot_sprot sp|A6LMH9|SYA_THEM4 1 239 + 239 Gaps:30 26.66 859 33.62 4e-18 Alanine--tRNA ligase OS Thermosipho melanesiensis (strain BI429 / DSM 12029) GN alaS PE 3 SV 1
blastp_uniprot_sprot sp|Q57984|SYA_METJA 35 256 + 222 Gaps:35 24.55 892 35.62 9e-18 Alanine--tRNA ligase OS Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN alaS PE 1 SV 1
blastp_uniprot_sprot sp|Q12U25|SYA_METBU 6 256 + 251 Gaps:27 25.79 923 28.57 1e-17 Alanine--tRNA ligase OS Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) GN alaS PE 3 SV 1
blastp_uniprot_sprot sp|Q2NEW4|SYA_METST 1 256 + 256 Gaps:25 27.35 903 29.96 2e-16 Alanine--tRNA ligase OS Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) GN alaS PE 3 SV 1
blastp_uniprot_sprot sp|A5UKU6|SYA_METS3 1 257 + 257 Gaps:19 27.65 897 28.23 2e-16 Alanine--tRNA ligase OS Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN alaS PE 3 SV 1
blastp_uniprot_sprot sp|A6US09|SYA_METVS 1 256 + 256 Gaps:29 26.57 892 33.76 2e-16 Alanine--tRNA ligase OS Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN alaS PE 3 SV 1
rpsblast_cdd gnl|CDD|178546 33 255 + 223 none 100.00 223 65.92 1e-104 PLN02961 PLN02961 alanine-tRNA ligase.
rpsblast_cdd gnl|CDD|32699 5 257 + 253 Gaps:29 97.93 241 31.78 1e-28 COG2872 COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only].
rpsblast_cdd gnl|CDD|200308 2 239 + 238 Gaps:47 24.50 902 30.77 3e-26 TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 107 256 150 SSF55186 none none IPR018163
PANTHER 1 253 253 PTHR11777:SF7 none none none
Pfam 32 91 60 PF01411 "KEGG:00970+6.1.1.7" tRNA synthetases class II (A) IPR018164
ProSiteProfiles 1 239 239 PS50860 "KEGG:00970+6.1.1.7" Alanyl-transfer RNA synthetases family profile. IPR018165
SUPERFAMILY 5 89 85 SSF50447 none none IPR009000
PANTHER 1 253 253 PTHR11777 none none none
Pfam 211 245 35 PF07973 none Threonyl and Alanyl tRNA synthetase second additional domain IPR012947

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting