Protein : Qrob_P0628690.2 Q. robur
Protein Identifier  ? Qrob_P0628690.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K14824 - ribosome biogenesis protein ERB1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 651  
Kegg Orthology  K14824
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006364 rRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
GO:0042254 ribosome biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102611280 7 650 + 644 Gaps:8 89.13 727 79.17 0.0 ribosome biogenesis protein BOP1 homolog
blastp_kegg lcl|cic:CICLE_v10000416mg 7 650 + 644 Gaps:8 89.13 727 79.17 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0004s23120g 4 650 + 647 Gaps:12 91.02 724 78.30 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_001697 1 650 + 650 Gaps:7 95.49 688 78.23 0.0 Transducin/WD40 repeat-like superfamily protein isoform 1
blastp_kegg lcl|rcu:RCOM_1374490 5 650 + 646 Gaps:13 88.84 735 77.34 0.0 ribosome biogenesis protein bop1 putative
blastp_kegg lcl|vvi:100251720 7 623 + 617 Gaps:8 90.45 691 80.32 0.0 ribosome biogenesis protein BOP1 homolog
blastp_kegg lcl|gmx:100818497 4 650 + 647 Gaps:10 91.50 718 75.04 0.0 ribosome biogenesis protein BOP1 homolog
blastp_kegg lcl|sot:102596556 4 650 + 647 Gaps:8 86.57 752 75.88 0.0 ribosome biogenesis protein BOP1 homolog
blastp_kegg lcl|gmx:100803648 4 650 + 647 Gaps:5 91.06 716 74.85 0.0 ribosome biogenesis protein BOP1 homolog
blastp_kegg lcl|sly:101245591 4 650 + 647 Gaps:8 86.00 757 75.88 0.0 ribosome biogenesis protein BOP1 homolog
blastp_uniprot_sprot sp|A8ID74|BOP1_CHLRE 35 650 + 616 Gaps:22 79.55 797 49.37 0.0 Ribosome biogenesis protein BOP1 homolog OS Chlamydomonas reinhardtii GN CHLREDRAFT_111274 PE 1 SV 2
blastp_uniprot_sprot sp|A9UZS7|BOP1_MONBE 36 648 + 613 Gaps:26 79.72 799 45.53 0.0 Ribosome biogenesis protein BOP1 homolog OS Monosiga brevicollis GN 37129 PE 3 SV 1
blastp_uniprot_sprot sp|A4IHS2|BOP1_XENTR 16 648 + 633 Gaps:22 88.75 729 44.98 0.0 Ribosome biogenesis protein bop1 OS Xenopus tropicalis GN bop1 PE 2 SV 1
blastp_uniprot_sprot sp|Q7T0W1|BOP1A_XENLA 18 648 + 631 Gaps:24 87.23 728 46.14 0.0 Ribosome biogenesis protein bop1-A OS Xenopus laevis GN bop1-a PE 2 SV 1
blastp_uniprot_sprot sp|Q7ZXX9|BOP1B_XENLA 18 648 + 631 Gaps:22 87.23 728 45.83 0.0 Ribosome biogenesis protein bop1-B OS Xenopus laevis GN bop1-b PE 2 SV 1
blastp_uniprot_sprot sp|Q562C2|BOP1_RAT 14 648 + 635 Gaps:34 90.15 731 44.01 0.0 Ribosome biogenesis protein BOP1 OS Rattus norvegicus GN Bop1 PE 2 SV 1
blastp_uniprot_sprot sp|A0JMQ0|BOP1_DANRE 32 648 + 617 Gaps:11 80.82 777 45.22 0.0 Ribosome biogenesis protein bop1 OS Danio rerio GN bop1 PE 2 SV 1
blastp_uniprot_sprot sp|P97452|BOP1_MOUSE 45 648 + 604 Gaps:19 83.74 732 45.35 0.0 Ribosome biogenesis protein BOP1 OS Mus musculus GN Bop1 PE 1 SV 1
blastp_uniprot_sprot sp|Q14137|BOP1_HUMAN 6 648 + 643 Gaps:38 88.61 746 43.27 0.0 Ribosome biogenesis protein BOP1 OS Homo sapiens GN BOP1 PE 1 SV 2
blastp_uniprot_sprot sp|B3MHX6|BOP1_DROAN 28 649 + 622 Gaps:25 80.83 793 43.06 1e-175 Ribosome biogenesis protein BOP1 homolog OS Drosophila ananassae GN GF11675 PE 3 SV 1
rpsblast_cdd gnl|CDD|149285 56 311 + 256 Gaps:5 100.00 259 57.92 1e-107 pfam08145 BOP1NT BOP1NT (NUC169) domain. This N terminal domain is found in BOP1-like WD40 proteins.
rpsblast_cdd gnl|CDD|198103 56 311 + 256 Gaps:8 100.00 264 51.52 1e-100 smart01035 BOP1NT BOP1NT (NUC169) domain. This N terminal domain is found in BOP1-like WD40 proteins.
rpsblast_cdd gnl|CDD|29257 314 648 + 335 Gaps:102 100.00 289 37.37 3e-25 cd00200 WD40 WD40 domain found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction pre-mRNA processing and cytoskeleton assembly typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long hence the name WD40 between GH and WD lies a conserved core serves as a stable propeller-like platform to which proteins can bind either stably or reversibly forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet instances with few detectable copies are hypothesized to form larger structures by dimerization each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands 7 copies of the repeat are present in this alignment..
rpsblast_cdd gnl|CDD|32473 307 648 + 342 Gaps:51 65.88 466 27.36 2e-13 COG2319 COG2319 FOG: WD40 repeat [General function prediction only].
rpsblast_kog gnl|CDD|35869 9 649 + 641 Gaps:21 88.40 733 51.39 0.0 KOG0650 KOG0650 KOG0650 WD40 repeat nucleolar protein Bop1 involved in ribosome biogenesis [Translation ribosomal structure and biogenesis].
rpsblast_kog gnl|CDD|35487 309 648 + 340 Gaps:114 76.54 456 34.96 1e-10 KOG0266 KOG0266 KOG0266 WD40 repeat-containing protein [General function prediction only].
rpsblast_kog gnl|CDD|35536 308 648 + 341 Gaps:66 87.78 311 29.67 7e-10 KOG0315 KOG0315 KOG0315 G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only].
rpsblast_kog gnl|CDD|35539 313 587 + 275 Gaps:78 74.79 603 27.49 1e-09 KOG0318 KOG0318 KOG0318 WD40 repeat stress protein/actin interacting protein [Cytoskeleton].
rpsblast_kog gnl|CDD|35493 325 648 + 324 Gaps:58 61.00 459 23.93 2e-09 KOG0272 KOG0272 KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification].
rpsblast_kog gnl|CDD|35862 317 594 + 278 Gaps:47 82.26 327 22.68 1e-08 KOG0643 KOG0643 KOG0643 Translation initiation factor 3 subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation ribosomal structure and biogenesis Signal transduction mechanisms].

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 606 649 44 SM00320 none WD40 repeats IPR001680
SMART 555 594 40 SM00320 none WD40 repeats IPR001680
SMART 353 392 40 SM00320 none WD40 repeats IPR001680
SMART 512 551 40 SM00320 none WD40 repeats IPR001680
SMART 311 350 40 SM00320 none WD40 repeats IPR001680
ProSiteProfiles 500 650 151 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
ProSiteProfiles 318 359 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
Gene3D 306 648 343 G3DSA:2.130.10.10 none none IPR015943
Pfam 56 311 256 PF08145 none BOP1NT (NUC169) domain IPR012953
ProSitePatterns 337 351 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
Pfam 557 593 37 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 622 648 27 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 313 350 38 PF00400 none WD domain, G-beta repeat IPR001680
PANTHER 32 650 619 PTHR17605 none none none
SUPERFAMILY 275 393 119 SSF50978 none none IPR017986
SUPERFAMILY 430 648 219 SSF50978 none none IPR017986
SMART 56 311 256 SM01035 none BOP1NT (NUC169) domain IPR012953
ProSiteProfiles 318 359 42 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
Hamap 1 649 649 MF_03027 none Ribosome biogenesis protein @gn(BOP1) [BOP1]. IPR028598

0 Localization

0 Qtllist

0 Targeting