Protein : Qrob_P0625610.2 Q. robur
Protein Identifier  ? Qrob_P0625610.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K00412 - ubiquinol-cytochrome c reductase cytochrome b subunit [EC:1.10.2.2] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 394  
Kegg Orthology  K00412
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0009055 electron carrier activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
GO:0022904 respiratory electron transport chain A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c The transfer of electrons from ubiquinol to cytochrome c that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex III.
GO:0008121 ubiquinol-cytochrome-c reductase activity Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+.
GO:0045275 respiratory chain complex III A protein complex that transfers electrons from ubiquinol to cytochrome c and translocates two protons across a membrane. The complex contains a core structure of three catalytic subunits: cytochrome b, the Rieske iron sulfur protein (ISP), and cytochrome c1, which are arranged in an integral membrane-bound dimeric complex; additional subunits are present, and vary among different species.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_Mp26 1 393 + 393 none 100.00 393 98.47 0.0 cob apocytochrome b
blastp_kegg lcl|eus:EUTSA_v10001270mg 1 393 + 393 none 100.00 393 97.71 0.0 hypothetical protein
blastp_kegg lcl|ath:ArthMp020 1 393 + 393 none 100.00 393 97.71 0.0 cob apocytochrome B
blastp_kegg lcl|ath:AT2G07727 1 393 + 393 none 100.00 393 97.71 0.0 cytochrome b
blastp_kegg lcl|mdm:13630213 1 392 + 392 none 99.75 393 98.21 0.0 cob C3258_p28 cob2
blastp_kegg lcl|pmum:103342942 1 393 + 393 none 100.00 393 97.20 0.0 cytochrome b
blastp_kegg lcl|vvi:7498619 1 393 + 393 none 100.00 393 97.20 0.0 cob2 ViviM_p035 apocytochrome b
blastp_kegg lcl|mtr:MTR_1g006200 1 392 + 392 none 100.00 392 96.94 0.0 Cytochrome b
blastp_kegg lcl|gmx:15308528 3 392 + 390 none 100.00 390 96.92 0.0 cob GlmaxMp09 apocytochrome b
blastp_kegg lcl|cam:101512281 1 392 + 392 none 100.00 392 96.94 0.0 cytochrome b-like
blastp_pdb 3l75_P 12 384 + 373 Gaps:3 97.89 380 52.69 7e-136 mol:protein length:380 CYTOCHROME B
blastp_pdb 3l75_C 12 384 + 373 Gaps:3 97.89 380 52.69 7e-136 mol:protein length:380 CYTOCHROME B
blastp_pdb 3l74_P 12 384 + 373 Gaps:3 97.89 380 52.69 7e-136 mol:protein length:380 CYTOCHROME B
blastp_pdb 3l74_C 12 384 + 373 Gaps:3 97.89 380 52.69 7e-136 mol:protein length:380 CYTOCHROME B
blastp_pdb 3l73_P 12 384 + 373 Gaps:3 97.89 380 52.69 7e-136 mol:protein length:380 CYTOCHROME B
blastp_pdb 3l73_C 12 384 + 373 Gaps:3 97.89 380 52.69 7e-136 mol:protein length:380 CYTOCHROME B
blastp_pdb 3l72_P 12 384 + 373 Gaps:3 97.89 380 52.69 7e-136 mol:protein length:380 CYTOCHROME B
blastp_pdb 3l72_C 12 384 + 373 Gaps:3 97.89 380 52.69 7e-136 mol:protein length:380 CYTOCHROME B
blastp_pdb 3l71_P 12 384 + 373 Gaps:3 97.89 380 52.69 7e-136 mol:protein length:380 Cytochrome b
blastp_pdb 3l71_C 12 384 + 373 Gaps:3 97.89 380 52.69 7e-136 mol:protein length:380 Cytochrome b
blastp_uniprot_sprot sp|P05718|CYB_VICFA 1 392 + 392 none 100.00 392 97.19 0.0 Cytochrome b OS Vicia faba GN MT-CYB PE 3 SV 2
blastp_uniprot_sprot sp|Q9ZZT8|CYB_PEA 1 392 + 392 none 100.00 392 96.94 0.0 Cytochrome b OS Pisum sativum GN MT-CYB PE 3 SV 1
blastp_uniprot_sprot sp|P42792|CYB_ARATH 1 393 + 393 none 100.00 393 95.93 0.0 Cytochrome b OS Arabidopsis thaliana GN MT-CYB PE 2 SV 2
blastp_uniprot_sprot sp|P29757|CYB_SOLTU 1 393 + 393 none 100.00 393 95.67 0.0 Cytochrome b OS Solanum tuberosum GN MT-CYB PE 1 SV 4
blastp_uniprot_sprot sp|P09843|CYB_OENBE 2 393 + 392 none 99.49 394 94.90 0.0 Cytochrome b OS Oenothera berteroana GN MT-CYB PE 2 SV 4
blastp_uniprot_sprot sp|P07747|CYB_WHEAT 1 393 + 393 none 98.74 398 93.89 0.0 Cytochrome b OS Triticum aestivum GN MT-CYB PE 2 SV 3
blastp_uniprot_sprot sp|P0C524|CYB_ORYSJ 1 393 + 393 none 98.99 397 94.15 0.0 Cytochrome b OS Oryza sativa subsp. japonica GN MT-CYB PE 2 SV 1
blastp_uniprot_sprot sp|P0C523|CYB_ORYSI 1 393 + 393 none 98.99 397 93.38 0.0 Cytochrome b OS Oryza sativa subsp. indica GN MT-CYB PE 2 SV 1
blastp_uniprot_sprot sp|P04165|CYB_MAIZE 1 388 + 388 none 100.00 388 94.07 0.0 Cytochrome b OS Zea mays GN MT-CYB PE 3 SV 2
blastp_uniprot_sprot sp|Q94S37|CYB_DAUCA 1 389 + 389 Gaps:1 97.99 398 86.41 0.0 Cytochrome b OS Daucus carota GN MT-CYB PE 3 SV 1

29 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 141 146 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 253 295 43 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 122 140 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 172 190 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PIRSF 1 393 393 PIRSF038885 none none IPR030689
Phobius 1 33 33 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 352 375 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 315 325 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 211 230 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 376 393 18 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 191 210 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 15 375 361 G3DSA:1.20.810.10 none none IPR027387
SUPERFAMILY 268 375 108 SSF81648 none none IPR005798
Phobius 326 346 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 147 171 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 347 351 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 15 267 253 SSF81342 none none IPR016174
Phobius 111 121 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 34 58 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 265 366 102 PF00032 none Cytochrome b(C-terminal)/b6/petD IPR005798
Phobius 296 314 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 231 252 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 93 260 168 PF13631 none Cytochrome b(N-terminal)/b6/petB IPR005797
ProSiteProfiles 217 387 171 PS51003 none Cytochrome b/b6 C-terminal region profile. IPR005798
PANTHER 14 385 372 PTHR19271:SF3 none none none
PANTHER 14 385 372 PTHR19271 none none none
Phobius 59 91 33 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 1 216 216 PS51002 none Cytochrome b/b6 N-terminal region profile. IPR005797
Phobius 92 110 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

9 Localization

Analysis Start End Length
TMHMM 86 108 22
TMHMM 121 140 19
TMHMM 354 376 22
TMHMM 34 56 22
TMHMM 295 314 19
TMHMM 329 347 18
TMHMM 185 207 22
TMHMM 150 172 22
TMHMM 236 258 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting