Protein : Qrob_P0619510.2 Q. robur
Protein Identifier  ? Qrob_P0619510.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) KOG0701//KOG1817 - dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]. // Ribonuclease [RNA processing and modification]. Code Enzyme  EC:3.1.26.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 274  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0004525 ribonuclease III activity Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103329362 6 243 + 238 Gaps:5 78.60 299 56.60 5e-86 ribonuclease 3-like protein 3
blastp_kegg lcl|pper:PRUPE_ppa024586mg 6 243 + 238 Gaps:5 91.09 258 56.17 1e-85 hypothetical protein
blastp_kegg lcl|pop:POPTR_0002s21490g 8 262 + 255 Gaps:14 85.37 287 57.55 8e-83 POPTRDRAFT_755875 ribonuclease 3 family protein
blastp_kegg lcl|cic:CICLE_v10016164mg 2 245 + 244 Gaps:9 84.15 284 55.65 5e-82 hypothetical protein
blastp_kegg lcl|pxb:103954957 9 243 + 235 Gaps:5 78.64 295 55.17 1e-80 ribonuclease 3-like protein 3
blastp_kegg lcl|vvi:100260185 2 245 + 244 Gaps:9 83.28 287 56.49 4e-80 ribonuclease 3-like protein 3-like
blastp_kegg lcl|fve:101299518 3 269 + 267 Gaps:14 88.26 298 52.85 6e-79 ribonuclease 3-like protein 3-like
blastp_kegg lcl|csv:101225452 6 251 + 246 Gaps:6 87.27 275 50.42 5e-78 ribonuclease 3-like protein 3-like
blastp_kegg lcl|csv:101206298 6 251 + 246 Gaps:6 87.27 275 50.00 6e-77 ribonuclease 3-like protein 3-like
blastp_kegg lcl|cit:102609714 2 245 + 244 Gaps:9 27.86 858 55.65 3e-76 uncharacterized LOC102609714
blastp_pdb 3c4t_A 8 243 + 236 Gaps:35 93.96 265 32.93 1e-24 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 3c4b_A 8 243 + 236 Gaps:35 93.96 265 32.93 1e-24 mol:protein length:265 Endoribonuclease Dicer
blastp_pdb 2eb1_C 8 182 + 175 Gaps:22 92.50 200 35.68 4e-23 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2eb1_B 8 182 + 175 Gaps:22 92.50 200 35.68 4e-23 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 2eb1_A 8 182 + 175 Gaps:22 92.50 200 35.68 4e-23 mol:protein length:200 Endoribonuclease Dicer
blastp_pdb 3n3w_B 9 243 + 235 Gaps:34 88.31 248 34.70 9e-17 mol:protein length:248 Ribonuclease III
blastp_pdb 3n3w_A 9 243 + 235 Gaps:34 88.31 248 34.70 9e-17 mol:protein length:248 Ribonuclease III
blastp_pdb 2nug_B 10 246 + 237 Gaps:42 98.19 221 33.18 3e-14 mol:protein length:221 Ribonuclease III
blastp_pdb 2nug_A 10 246 + 237 Gaps:42 98.19 221 33.18 3e-14 mol:protein length:221 Ribonuclease III
blastp_pdb 2nuf_B 10 246 + 237 Gaps:42 98.19 221 33.18 3e-14 mol:protein length:221 Ribonuclease III
blastp_uniprot_sprot sp|Q69KJ0|RTL3_ORYSJ 13 246 + 234 Gaps:5 77.93 299 48.93 4e-69 Ribonuclease 3-like protein 3 OS Oryza sativa subsp. japonica GN Os06g0358800 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LTQ0|RTL2_ARATH 9 256 + 248 Gaps:17 63.17 391 38.87 1e-45 Ribonuclease 3-like protein 2 OS Arabidopsis thaliana GN RTL2 PE 1 SV 1
blastp_uniprot_sprot sp|Q6ATG6|RTL2_ORYSJ 13 239 + 227 Gaps:18 72.24 317 39.74 2e-40 Ribonuclease 3-like protein 2 OS Oryza sativa subsp. japonica GN Os05g0271300 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LMR2|DCL1_ORYSJ 2 270 + 269 Gaps:19 14.02 1883 37.12 3e-40 Endoribonuclease Dicer homolog 1 OS Oryza sativa subsp. japonica GN DCL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SP32|DCL1_ARATH 5 231 + 227 Gaps:17 12.26 1909 38.89 1e-39 Endoribonuclease Dicer homolog 1 OS Arabidopsis thaliana GN DCL1 PE 1 SV 2
blastp_uniprot_sprot sp|Q7XD96|DCL3B_ORYSJ 10 196 + 187 Gaps:10 11.55 1637 37.57 4e-31 Endoribonuclease Dicer homolog 3b OS Oryza sativa subsp. japonica GN DCL3B PE 3 SV 2
blastp_uniprot_sprot sp|P84634|DCL4_ARATH 4 243 + 240 Gaps:11 14.16 1702 34.02 5e-31 Dicer-like protein 4 OS Arabidopsis thaliana GN DCL4 PE 1 SV 2
blastp_uniprot_sprot sp|Q5N870|DCL3A_ORYSJ 10 228 + 219 Gaps:22 13.51 1651 37.22 7e-30 Endoribonuclease Dicer homolog 3a OS Oryza sativa subsp. japonica GN DCL3A PE 2 SV 1
blastp_uniprot_sprot sp|Q9LXW7|DCL3_ARATH 7 263 + 257 Gaps:13 16.20 1580 34.38 3e-29 Endoribonuclease Dicer homolog 3 OS Arabidopsis thaliana GN DCL3 PE 1 SV 2
blastp_uniprot_sprot sp|Q3EBC8|DCL2_ARATH 13 193 + 181 Gaps:9 13.11 1388 39.01 9e-29 Endoribonuclease Dicer homolog 2 OS Arabidopsis thaliana GN At3g03300 PE 1 SV 2

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 10 157 148 PS50142 none Ribonuclease III family domain profile. IPR000999
Pfam 50 156 107 PF00636 none Ribonuclease III domain IPR000999
SUPERFAMILY 9 175 167 SSF69065 none none IPR000999
Gene3D 182 243 62 G3DSA:3.30.160.20 none none IPR014720
SMART 183 244 62 SM00358 none Double-stranded RNA binding motif IPR014720
SUPERFAMILY 139 243 105 SSF54768 none none none
Pfam 183 242 60 PF00035 none Double-stranded RNA binding motif IPR014720
SMART 25 179 155 SM00535 none Ribonuclease III family IPR000999
Gene3D 9 175 167 G3DSA:1.10.1520.10 none none IPR000999
PANTHER 9 246 238 PTHR14950 none none none
PANTHER 9 246 238 PTHR14950:SF18 none none none

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting