Protein : Qrob_P0618860.2 Q. robur
Protein Identifier  ? Qrob_P0618860.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) PTHR10169//PTHR10169:SF26 - DNA TOPOISOMERASE/GYRASE // SUBFAMILY NOT NAMED Code Enzyme  EC:5.99.1.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 221  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
GO:0006265 DNA topological change The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
GO:0006259 DNA metabolic process Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103438749 1 181 + 181 Gaps:18 35.43 494 68.00 1e-63 DNA gyrase subunit A chloroplastic/mitochondrial-like
blastp_kegg lcl|csv:101225170 1 181 + 181 Gaps:18 21.90 799 72.00 5e-61 DNA gyrase subunit A chloroplastic/mitochondrial-like
blastp_kegg lcl|csv:101213688 1 181 + 181 Gaps:18 18.96 923 72.00 1e-60 DNA gyrase subunit A chloroplastic/mitochondrial-like
blastp_kegg lcl|pper:PRUPE_ppa021419mg 25 181 + 157 Gaps:16 35.09 436 73.86 1e-60 hypothetical protein
blastp_kegg lcl|pda:103709070 1 181 + 181 Gaps:23 19.12 931 68.54 2e-60 probable DNA gyrase subunit A chloroplastic/mitochondrial
blastp_kegg lcl|sot:102598827 1 181 + 181 Gaps:10 17.75 997 67.80 2e-60 DNA gyrase subunit A chloroplastic/mitochondrial-like
blastp_kegg lcl|pxb:103946146 1 181 + 181 Gaps:18 18.50 946 66.86 3e-60 DNA gyrase subunit A chloroplastic/mitochondrial
blastp_kegg lcl|cam:101509952 1 181 + 181 Gaps:12 18.15 942 69.01 5e-60 DNA gyrase subunit A chloroplastic/mitochondrial-like
blastp_kegg lcl|tcc:TCM_044582 1 181 + 181 Gaps:12 12.35 1368 72.19 6e-60 DNA gyrase subunit A
blastp_kegg lcl|vvi:100250492 18 194 + 177 Gaps:23 18.81 925 66.09 6e-59 DNA gyrase subunit A chloroplastic/mitochondrial-like
blastp_pdb 2y3p_B 90 181 + 92 none 17.62 522 63.04 1e-33 mol:protein length:522 DNA GYRASE SUBUNIT A
blastp_pdb 2y3p_A 90 181 + 92 none 17.62 522 63.04 1e-33 mol:protein length:522 DNA GYRASE SUBUNIT A
blastp_pdb 3nuh_A 90 181 + 92 none 17.52 525 63.04 1e-33 mol:protein length:525 DNA gyrase subunit A
blastp_pdb 2xcr_U 94 181 + 88 none 12.12 726 57.95 2e-30 mol:protein length:726 DNA GYRASE SUBUNIT B DNA GYRASE SUBUNIT A
blastp_pdb 2xcr_S 94 181 + 88 none 12.12 726 57.95 2e-30 mol:protein length:726 DNA GYRASE SUBUNIT B DNA GYRASE SUBUNIT A
blastp_pdb 2xcr_D 94 181 + 88 none 12.12 726 57.95 2e-30 mol:protein length:726 DNA GYRASE SUBUNIT B DNA GYRASE SUBUNIT A
blastp_pdb 2xcr_B 94 181 + 88 none 12.12 726 57.95 2e-30 mol:protein length:726 DNA GYRASE SUBUNIT B DNA GYRASE SUBUNIT A
blastp_pdb 2xct_U 94 181 + 88 none 12.72 692 57.95 2e-30 mol:protein length:692 DNA GYRASE SUBUNIT B DNA GYRASE SUBUNIT A
blastp_pdb 2xct_S 94 181 + 88 none 12.72 692 57.95 2e-30 mol:protein length:692 DNA GYRASE SUBUNIT B DNA GYRASE SUBUNIT A
blastp_pdb 2xct_D 94 181 + 88 none 12.72 692 57.95 2e-30 mol:protein length:692 DNA GYRASE SUBUNIT B DNA GYRASE SUBUNIT A
blastp_uniprot_sprot sp|Q5YLB5|GYRA_NICBE 11 181 + 171 Gaps:8 17.86 935 64.67 1e-60 DNA gyrase subunit A chloroplastic/mitochondrial OS Nicotiana benthamiana GN GYRA PE 2 SV 1
blastp_uniprot_sprot sp|Q9CAF6|GYRA_ARATH 33 181 + 149 Gaps:16 14.84 950 72.34 3e-54 Probable DNA gyrase subunit A chloroplastic/mitochondrial OS Arabidopsis thaliana GN GYRA PE 1 SV 2
blastp_uniprot_sprot sp|Q7XZF7|GYRA_ORYSJ 94 181 + 88 none 9.37 939 88.64 6e-49 Probable DNA gyrase subunit A chloroplastic/mitochondrial OS Oryza sativa subsp. japonica GN GYRA PE 2 SV 2
blastp_uniprot_sprot sp|P73077|PARC_SYNY3 93 181 + 89 none 9.67 920 70.79 4e-40 DNA topoisomerase 4 subunit A OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN parC PE 3 SV 2
blastp_uniprot_sprot sp|Q55738|GYRA_SYNY3 90 181 + 92 none 10.70 860 68.48 1e-38 DNA gyrase subunit A OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN gyrA PE 3 SV 1
blastp_uniprot_sprot sp|P94605|GYRA_CLOAB 93 188 + 96 Gaps:3 11.20 830 64.52 3e-36 DNA gyrase subunit A OS Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN gyrA PE 3 SV 2
blastp_uniprot_sprot sp|P48370|GYRA_HELPY 95 181 + 87 none 10.52 827 66.67 8e-35 DNA gyrase subunit A OS Helicobacter pylori (strain ATCC 700392 / 26695) GN gyrA PE 3 SV 2
blastp_uniprot_sprot sp|P48369|GYRA_AERSA 95 181 + 87 none 9.44 922 67.82 9e-35 DNA gyrase subunit A OS Aeromonas salmonicida GN gyrA PE 3 SV 1
blastp_uniprot_sprot sp|Q9ZLD9|GYRA_HELPJ 95 181 + 87 none 10.51 828 66.67 9e-35 DNA gyrase subunit A OS Helicobacter pylori (strain J99 / ATCC 700824) GN gyrA PE 3 SV 1
blastp_uniprot_sprot sp|B0S912|GYRA_LEPBA 84 181 + 98 none 11.63 843 59.18 2e-34 DNA gyrase subunit A OS Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN gyrA PE 3 SV 1

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 111 184 74 G3DSA:3.90.199.10 none none IPR013758
SUPERFAMILY 93 182 90 SSF56719 none none IPR013760
PANTHER 94 181 88 PTHR10169 none none none
Pfam 119 188 70 PF00521 none DNA gyrase/topoisomerase IV, subunit A IPR002205
PANTHER 94 181 88 PTHR10169:SF26 none none none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting