Protein : Qrob_P0613180.2 Q. robur
Protein Identifier  ? Qrob_P0613180.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) KOG0438//KOG0899//KOG2309 - Mitochondrial/chloroplast ribosomal protein L2 [Translation ribosomal structure and biogenesis]. // Mitochondrial/chloroplast ribosomal protein S19 [Translation ribosomal structure and biogenesis]. // 60s ribosomal protein L2/L8 [Translation ribosomal structure and biogenesis]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 187  
Kegg Orthology  K02886
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015934 large ribosomal subunit The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).
GO:0016740 transferase activity Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sly:101258178 2 186 + 185 Gaps:54 39.86 414 81.82 1e-77 50S ribosomal protein L2 chloroplastic-like
blastp_kegg lcl|mtr:MTR_4g034730 2 186 + 185 Gaps:54 41.35 399 81.82 3e-76 50S ribosomal protein L2-B
blastp_kegg lcl|fve:101314903 2 119 + 118 Gaps:17 79.41 170 82.96 1e-69 50S ribosomal protein L2 chloroplastic-like
blastp_kegg lcl|tcc:ThcaC_p061 2 119 + 118 Gaps:17 49.09 275 83.70 1e-68 rpl2 ribosomal protein L2
blastp_kegg lcl|fve:10251609 2 119 + 118 Gaps:17 49.27 274 82.96 3e-68 rpl2 FvH4_C0130 ribosomal protein L2
blastp_kegg lcl|fve:10251562 2 119 + 118 Gaps:17 49.27 274 82.96 3e-68 rpl2 FvH4_C0084 ribosomal protein L2
blastp_kegg lcl|pop:Poptr_cp100 2 119 + 118 Gaps:17 49.27 274 83.70 3e-68 rpl2 ribosomal protein L2
blastp_kegg lcl|pop:Poptr_cp064 2 119 + 118 Gaps:17 49.27 274 83.70 3e-68 rpl2 ribosomal protein L2
blastp_kegg lcl|pmum:18668113 2 119 + 118 Gaps:17 49.45 273 82.96 3e-68 rpl2 CP95_p001 ribosomal protein L2
blastp_kegg lcl|pmum:18668073 2 119 + 118 Gaps:17 49.45 273 82.96 3e-68 rpl2 CP95_p025 ribosomal protein L2
blastp_pdb 3bbo_E 2 118 + 117 Gaps:17 49.81 269 79.10 2e-65 mol:protein length:269 Ribosomal Protein L2
blastp_pdb 4dhc_D 11 119 + 109 Gaps:1 39.13 276 54.63 6e-31 mol:protein length:276 50S Ribosomal Protein L2
blastp_pdb 4dha_D 11 119 + 109 Gaps:1 39.13 276 54.63 6e-31 mol:protein length:276 50S Ribosomal Protein L2
blastp_pdb 4abs_D 11 119 + 109 Gaps:1 39.13 276 54.63 6e-31 mol:protein length:276 50S RIBOSOMAL PROTEIN L2
blastp_pdb 3zvp_D 11 119 + 109 Gaps:1 39.13 276 54.63 6e-31 mol:protein length:276 50S RIBOSOMAL PROTEIN L2
blastp_pdb 3uzn_D 11 119 + 109 Gaps:1 39.13 276 54.63 6e-31 mol:protein length:276 50S ribosomal protein L2
blastp_pdb 3uzk_D 11 119 + 109 Gaps:1 39.13 276 54.63 6e-31 mol:protein length:276 50S ribosomal protein L2
blastp_pdb 3uzh_D 11 119 + 109 Gaps:1 39.13 276 54.63 6e-31 mol:protein length:276 50S ribosomal protein L2
blastp_pdb 3uzf_D 11 119 + 109 Gaps:1 39.13 276 54.63 6e-31 mol:protein length:276 50S ribosomal protein L2
blastp_pdb 3uz9_D 11 119 + 109 Gaps:1 39.13 276 54.63 6e-31 mol:protein length:276 50S ribosomal protein L2
blastp_uniprot_sprot sp|B1A976|RK2_CARPA 2 119 + 118 Gaps:17 49.27 274 83.70 3e-70 50S ribosomal protein L2 chloroplastic OS Carica papaya GN rpl2-A PE 3 SV 1
blastp_uniprot_sprot sp|Q2L944|RK2_GOSHI 2 119 + 118 Gaps:17 49.27 274 83.70 5e-70 50S ribosomal protein L2 chloroplastic OS Gossypium hirsutum GN rpl2-A PE 3 SV 1
blastp_uniprot_sprot sp|Q14F95|RK2A_POPAL 2 119 + 118 Gaps:17 49.09 275 83.70 8e-70 50S ribosomal protein L2-A chloroplastic OS Populus alba GN rpl2-A PE 3 SV 1
blastp_uniprot_sprot sp|B1NWJ1|RK2_MANES 2 119 + 118 Gaps:17 48.74 277 83.70 9e-70 50S ribosomal protein L2 chloroplastic OS Manihot esculenta GN rpl2-A PE 3 SV 1
blastp_uniprot_sprot sp|Q14FB6|RK2B_POPAL 2 119 + 118 Gaps:17 49.27 274 83.70 9e-70 50S ribosomal protein L2-B chloroplastic OS Populus alba GN rpl2-B PE 3 SV 1
blastp_uniprot_sprot sp|A4GYV2|RK2_POPTR 2 119 + 118 Gaps:17 49.27 274 83.70 1e-69 50S ribosomal protein L2 chloroplastic OS Populus trichocarpa GN rpl2-A PE 3 SV 1
blastp_uniprot_sprot sp|Q4VZK5|RK2_CUCSA 2 119 + 118 Gaps:17 49.27 274 83.70 1e-69 50S ribosomal protein L2 chloroplastic OS Cucumis sativus GN rpl2-A PE 3 SV 1
blastp_uniprot_sprot sp|Q0ZIX7|RK2_VITVI 2 119 + 118 Gaps:17 49.27 274 82.96 2e-69 50S ribosomal protein L2 chloroplastic OS Vitis vinifera GN rpl2-A PE 3 SV 1
blastp_uniprot_sprot sp|Q09MB2|RK2_CITSI 2 120 + 119 Gaps:17 49.64 274 81.62 3e-69 50S ribosomal protein L2 chloroplastic OS Citrus sinensis GN rpl2-A PE 3 SV 1
blastp_uniprot_sprot sp|Q09WV5|RK2_MORIN 2 119 + 118 Gaps:17 49.27 274 82.96 3e-69 50S ribosomal protein L2 chloroplastic OS Morus indica GN rpl2-A PE 3 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 127 186 60 PF00203 none Ribosomal protein S19 IPR002222
ProSitePatterns 63 74 12 PS00467 none Ribosomal protein L2 signature. IPR022671
SUPERFAMILY 132 186 55 SSF54570 none none IPR023575
PANTHER 10 127 118 PTHR13691 none none IPR002171
Gene3D 41 119 79 G3DSA:4.10.950.10 none none IPR014726
Gene3D 125 186 62 G3DSA:3.30.860.10 none none IPR023575
PANTHER 10 127 118 PTHR13691:SF5 none none IPR005880
Gene3D 9 40 32 G3DSA:2.30.30.30 none none IPR014722
Pfam 10 97 88 PF03947 none Ribosomal Proteins L2, C-terminal domain IPR022669
SUPERFAMILY 2 118 117 SSF50104 none none IPR008991
PRINTS 179 186 8 PR00975 none Ribosomal protein S19 family signature IPR002222
PRINTS 159 178 20 PR00975 none Ribosomal protein S19 family signature IPR002222

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting