Protein : Qrob_P0594780.2 Q. robur

Protein Identifier  ? Qrob_P0594780.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=20) K00025 - malate dehydrogenase [EC:1.1.1.37] Code Enzyme  EC:1.1.1.37
Gene Prediction Quality  validated Protein length 

Sequence

Length: 216  
Kegg Orthology  K00025

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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
GO:0006108 malate metabolic process The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.
GO:0016615 malate dehydrogenase activity Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101221189 1 215 + 215 Gaps:27 66.48 364 64.88 2e-100 malate dehydrogenase cytoplasmic-like
blastp_kegg lcl|cmo:103483128 1 215 + 215 Gaps:27 66.48 364 64.05 6e-100 malate dehydrogenase cytoplasmic-like
blastp_kegg lcl|cit:102615934 1 215 + 215 Gaps:29 66.67 366 63.52 2e-98 malate dehydrogenase cytoplasmic-like
blastp_kegg lcl|pxb:103953311 1 215 + 215 Gaps:29 64.89 376 61.89 8e-96 malate dehydrogenase-like
blastp_kegg lcl|mdm:103435358 6 215 + 210 Gaps:27 63.03 376 63.29 1e-95 malate dehydrogenase-like
blastp_kegg lcl|pxb:103932637 6 215 + 210 Gaps:27 63.03 376 63.29 4e-95 malate dehydrogenase-like
blastp_kegg lcl|pxb:103932290 6 215 + 210 Gaps:27 63.03 376 62.45 9e-93 malate dehydrogenase-like
blastp_kegg lcl|cam:101501958 6 215 + 210 Gaps:27 62.20 381 63.29 1e-92 malate dehydrogenase cytoplasmic-like
blastp_kegg lcl|cic:CICLE_v10021075mg 48 215 + 168 none 50.60 332 78.57 1e-91 hypothetical protein
blastp_kegg lcl|tcc:TCM_005626 2 211 + 210 Gaps:27 58.81 403 61.18 4e-91 Lactate/malate dehydrogenase family protein isoform 1
blastp_pdb 5mdh_B 35 204 + 170 Gaps:3 50.15 333 52.10 4e-52 mol:protein length:333 MALATE DEHYDROGENASE
blastp_pdb 5mdh_A 35 204 + 170 Gaps:3 50.15 333 52.10 4e-52 mol:protein length:333 MALATE DEHYDROGENASE
blastp_pdb 4mdh_B 35 204 + 170 Gaps:3 50.00 334 52.10 4e-52 mol:protein length:334 CYTOPLASMIC MALATE DEHYDROGENASE
blastp_pdb 4mdh_A 35 204 + 170 Gaps:3 50.00 334 52.10 4e-52 mol:protein length:334 CYTOPLASMIC MALATE DEHYDROGENASE
blastp_pdb 3d5t_D 24 215 + 192 Gaps:11 57.70 331 43.46 1e-44 mol:protein length:331 Malate dehydrogenase
blastp_pdb 3d5t_C 24 215 + 192 Gaps:11 57.70 331 43.46 1e-44 mol:protein length:331 Malate dehydrogenase
blastp_pdb 3d5t_B 24 215 + 192 Gaps:11 57.70 331 43.46 1e-44 mol:protein length:331 Malate dehydrogenase
blastp_pdb 3d5t_A 24 215 + 192 Gaps:11 57.70 331 43.46 1e-44 mol:protein length:331 Malate dehydrogenase
blastp_pdb 2cvq_B 24 215 + 192 Gaps:8 59.33 327 42.78 2e-42 mol:protein length:327 Malate dehydrogenase
blastp_pdb 2cvq_A 24 215 + 192 Gaps:8 59.33 327 42.78 2e-42 mol:protein length:327 Malate dehydrogenase
blastp_uniprot_sprot sp|O48905|MDHC_MEDSA 41 215 + 175 Gaps:1 52.41 332 73.56 7e-88 Malate dehydrogenase cytoplasmic OS Medicago sativa GN CMDH PE 1 SV 1
blastp_uniprot_sprot sp|Q08062|MDHC_MAIZE 48 215 + 168 none 50.60 332 73.81 1e-87 Malate dehydrogenase cytoplasmic OS Zea mays PE 1 SV 2
blastp_uniprot_sprot sp|Q9FSF0|MDH_TOBAC 41 215 + 175 Gaps:1 52.41 332 72.99 4e-87 Malate dehydrogenase OS Nicotiana tabacum GN MD1 PE 1 SV 1
blastp_uniprot_sprot sp|P57106|MDHC2_ARATH 54 215 + 162 none 48.80 332 77.16 5e-87 Malate dehydrogenase cytoplasmic 2 OS Arabidopsis thaliana GN At5g43330 PE 2 SV 1
blastp_uniprot_sprot sp|P93819|MDHC1_ARATH 48 215 + 168 none 50.60 332 73.81 1e-86 Malate dehydrogenase cytoplasmic 1 OS Arabidopsis thaliana GN At1g04410 PE 1 SV 2
blastp_uniprot_sprot sp|O24047|MDHC_MESCR 1 215 + 215 Gaps:7 62.65 332 64.90 2e-86 Malate dehydrogenase cytoplasmic OS Mesembryanthemum crystallinum GN MDH PE 2 SV 1
blastp_uniprot_sprot sp|Q7XDC8|MDHC_ORYSJ 48 215 + 168 none 50.60 332 72.62 5e-86 Malate dehydrogenase cytoplasmic OS Oryza sativa subsp. japonica GN Os10g0478200 PE 1 SV 3
blastp_uniprot_sprot sp|Q9SML8|MDHC_BETVU 48 215 + 168 none 50.60 332 71.43 2e-84 Malate dehydrogenase cytoplasmic OS Beta vulgaris GN NR1 PE 1 SV 1
blastp_uniprot_sprot sp|O88989|MDHC_RAT 35 212 + 178 Gaps:3 52.40 334 52.00 4e-53 Malate dehydrogenase cytoplasmic OS Rattus norvegicus GN Mdh1 PE 1 SV 3
blastp_uniprot_sprot sp|P14152|MDHC_MOUSE 35 212 + 178 Gaps:3 52.40 334 52.00 5e-53 Malate dehydrogenase cytoplasmic OS Mus musculus GN Mdh1 PE 1 SV 3

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 40 160 121 SSF51735 none none none
Gene3D 34 160 127 G3DSA:3.40.50.720 none none IPR016040
Pfam 43 158 116 PF00056 none lactate/malate dehydrogenase, NAD binding domain IPR001236
Phobius 27 215 189 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 41 211 171 PTHR23382 "KEGG:00020+1.1.1.37","KEGG:00270+1.1.1.37","KEGG:00620+1.1.1.37","KEGG:00630+1.1.1.37","KEGG:00680+1.1.1.37","KEGG:00710+1.1.1.37","KEGG:00720+1.1.1.37","MetaCyc:PWY-1622","MetaCyc:PWY-5392","MetaCyc:PWY-561","MetaCyc:PWY-5690","MetaCyc:PWY-5913","MetaCyc:PWY-6728","MetaCyc:PWY-6969","MetaCyc:PWY-7115","MetaCyc:PWY-7383";signature_desc=MALATE DEHYDROGENASE none IPR010945
Pfam 162 208 47 PF02866 none lactate/malate dehydrogenase, alpha/beta C-terminal domain IPR022383
ProSitePatterns 161 173 13 PS00068 "KEGG:00020+1.1.1.37","KEGG:00270+1.1.1.37","KEGG:00620+1.1.1.37","KEGG:00630+1.1.1.37","KEGG:00680+1.1.1.37","KEGG:00710+1.1.1.37","KEGG:00720+1.1.1.37","MetaCyc:PWY-1622","MetaCyc:PWY-5392","MetaCyc:PWY-561","MetaCyc:PWY-5690","MetaCyc:PWY-5913","MetaCyc:PWY-6728","MetaCyc:PWY-6969","MetaCyc:PWY-7115","MetaCyc:PWY-7383","Reactome:REACT_474" Malate dehydrogenase active site signature. IPR001252
Phobius 1 5 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 161 210 50 G3DSA:3.90.110.10 none none IPR015955
Phobius 6 26 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 162 214 53 SSF56327 none none IPR015955

1 Localization

Analysis Start End Length
TMHMM 7 24 17

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting