Protein : Qrob_P0591800.2 Q. robur
Protein Identifier  ? Qrob_P0591800.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=4) K02350 - DNA polymerase zeta subunit [EC:2.7.7.7] Code Enzyme  EC:2.7.7.7
Gene Prediction Quality  validated Protein length 

Sequence

Length: 600  
Kegg Orthology  K02350
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0003887 DNA-directed DNA polymerase activity Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.
GO:0016035 zeta DNA polymerase complex A heterodimeric DNA polymerase complex that catalyzes error-prone DNA synthesis in contexts such as translesion synthesis and double-stranded break repair. First characterized in Saccharomyces, in which the subunits are Rev3p and Rev7p; a third protein, Rev1p, is often associated with the polymerase dimer.
GO:0019985 translesion synthesis The replication of damaged DNA by synthesis across a lesion in the template strand; a specialized DNA polymerase or replication complex inserts a defined nucleotide across from the lesion which allows DNA synthesis to continue beyond the lesion. This process can be mutagenic depending on the damaged nucleotide and the inserted nucleotide.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102622531 1 599 + 599 Gaps:78 37.44 1808 75.33 0.0 DNA polymerase zeta catalytic subunit-like
blastp_kegg lcl|cic:CICLE_v10003639mg 1 599 + 599 Gaps:78 38.89 1741 75.33 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0013s02320g 1 599 + 599 Gaps:78 36.50 1855 74.30 0.0 POPTRDRAFT_240745 POPTRDRAFT_729606 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1431670 1 596 + 596 Gaps:78 32.62 2066 74.18 0.0 DNA polymerase zeta catalytic subunit putative (EC:2.7.7.7)
blastp_kegg lcl|tcc:TCM_026537 1 599 + 599 Gaps:79 33.22 2035 74.41 0.0 Recovery protein 3 isoform 1
blastp_kegg lcl|mdm:103450935 1 599 + 599 Gaps:78 66.05 1025 73.12 0.0 DNA polymerase zeta catalytic subunit-like
blastp_kegg lcl|pper:PRUPE_ppa000111mg 1 599 + 599 Gaps:78 38.23 1771 73.12 0.0 hypothetical protein
blastp_kegg lcl|pmum:103344607 1 596 + 596 Gaps:69 24.64 2699 74.14 0.0 DNA polymerase zeta catalytic subunit
blastp_kegg lcl|vvi:100263126 1 597 + 597 Gaps:79 33.67 2002 73.29 0.0 uncharacterized LOC100263126
blastp_kegg lcl|gmx:100777934 1 599 + 599 Gaps:80 34.16 1976 72.15 0.0 DNA polymerase zeta catalytic subunit-like
blastp_pdb 3iay_A 4 478 + 475 Gaps:81 55.93 919 29.96 1e-55 mol:protein length:919 DNA polymerase delta catalytic subunit
blastp_pdb 2gv9_B 4 421 + 418 Gaps:164 45.77 1193 24.91 4e-33 mol:protein length:1193 DNA polymerase
blastp_pdb 2gv9_A 4 421 + 418 Gaps:164 45.77 1193 24.91 4e-33 mol:protein length:1193 DNA polymerase
blastp_pdb 1qht_A 1 473 + 473 Gaps:65 63.48 775 27.24 6e-29 mol:protein length:775 PROTEIN (DNA POLYMERASE)
blastp_pdb 2vwk_A 1 473 + 473 Gaps:65 63.65 773 26.42 2e-28 mol:protein length:773 DNA POLYMERASE
blastp_pdb 2xhb_A 1 473 + 473 Gaps:65 63.65 773 26.42 2e-28 mol:protein length:773 DNA POLYMERASE
blastp_pdb 1tgo_A 1 473 + 473 Gaps:65 63.65 773 26.42 2e-28 mol:protein length:773 PROTEIN (THERMOSTABLE B DNA POLYMERASE)
blastp_pdb 2vwj_A 1 473 + 473 Gaps:65 63.65 773 26.42 3e-28 mol:protein length:773 DNA POLYMERASE
blastp_pdb 2jgu_A 1 473 + 473 Gaps:72 63.61 775 25.76 4e-26 mol:protein length:775 DNA POLYMERASE
blastp_pdb 3a2f_A 5 473 + 469 Gaps:72 63.10 775 25.77 1e-25 mol:protein length:775 DNA polymerase
blastp_uniprot_sprot sp|Q766Z3|REV3_ARATH 1 599 + 599 Gaps:77 35.77 1890 70.27 0.0 DNA polymerase zeta catalytic subunit OS Arabidopsis thaliana GN REV3 PE 2 SV 1
blastp_uniprot_sprot sp|O60673|DPOLZ_HUMAN 1 578 + 578 Gaps:86 20.70 3130 45.83 5e-170 DNA polymerase zeta catalytic subunit OS Homo sapiens GN REV3L PE 1 SV 2
blastp_uniprot_sprot sp|Q61493|DPOLZ_MOUSE 1 578 + 578 Gaps:86 20.76 3122 45.83 9e-169 DNA polymerase zeta catalytic subunit OS Mus musculus GN Rev3l PE 1 SV 3
blastp_uniprot_sprot sp|P14284|DPOZ_YEAST 1 598 + 598 Gaps:101 44.88 1504 40.00 4e-158 DNA polymerase zeta catalytic subunit OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN REV3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9P6L6|DPOZ_SCHPO 1 576 + 576 Gaps:96 44.05 1480 39.26 3e-139 DNA polymerase zeta catalytic subunit OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rev3 PE 3 SV 1
blastp_uniprot_sprot sp|P46588|DPOD_CANAX 4 587 + 584 Gaps:105 61.18 1038 29.61 9e-66 DNA polymerase delta catalytic subunit OS Candida albicans GN POL3 PE 3 SV 2
blastp_uniprot_sprot sp|P52431|DPOD1_MOUSE 4 580 + 577 Gaps:93 56.65 1105 30.03 2e-65 DNA polymerase delta catalytic subunit OS Mus musculus GN Pold1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LRE6|DPOD1_ORYSJ 1 578 + 578 Gaps:95 56.74 1105 30.14 4e-65 DNA polymerase delta catalytic subunit OS Oryza sativa subsp. japonica GN POLD1 PE 2 SV 1
blastp_uniprot_sprot sp|P28339|DPOD1_BOVIN 4 580 + 577 Gaps:93 56.60 1106 30.03 1e-64 DNA polymerase delta catalytic subunit OS Bos taurus GN POLD1 PE 1 SV 1
blastp_uniprot_sprot sp|P97283|DPOD1_MESAU 4 580 + 577 Gaps:93 56.75 1103 29.71 2e-64 DNA polymerase delta catalytic subunit OS Mesocricetus auratus GN POLD1 PE 2 SV 1

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 1 69 69 G3DSA:3.30.420.10 none none IPR012337
Phobius 1 134 134 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 227 324 98 G3DSA:3.90.1600.10 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" none IPR023211
Gene3D 110 138 29 G3DSA:3.90.1600.10 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" none IPR023211
PANTHER 1 584 584 PTHR10322 none none none
Phobius 160 599 440 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 165 216 52 G3DSA:1.10.287.690 none none none
PANTHER 1 584 584 PTHR10322:SF5 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7";signature_desc=DNA POLYMERASE ZETA CATALYTIC SUBUNIT none IPR030559
SUPERFAMILY 109 477 369 SSF56672 none none none
ProSitePatterns 261 269 9 PS00116 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA polymerase family B signature. IPR017964
SUPERFAMILY 2 84 83 SSF53098 none none IPR012337
Pfam 70 467 398 PF00136 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA polymerase family B IPR006134
Pfam 512 571 60 PF14260 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" C4-type zinc-finger of DNA polymerase delta IPR025687
Phobius 135 159 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SMART 1 273 273 SM00486 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA polymerase type-B family IPR006172
PRINTS 203 215 13 PR00106 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA-directed DNA-polymerase family B signature IPR006172
PRINTS 122 135 14 PR00106 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA-directed DNA-polymerase family B signature IPR006172
PRINTS 259 267 9 PR00106 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA-directed DNA-polymerase family B signature IPR006172

1 Localization

Analysis Start End Length
TMHMM 135 157 22

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting