Protein : Qrob_P0589090.2 Q. robur
Protein Identifier  ? Qrob_P0589090.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR24006:SF360 - UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 (PTHR24006:SF360) Code Enzyme  EC:3.4.19.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 863  
Kegg Orthology  K11835
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0006511 ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO:0004843 ubiquitin-specific protease activity Catalysis of the thiol-dependent hydrolysis of a peptide bond formed by the C-terminal glycine of ubiquitin.
GO:0036459 ubiquitinyl hydrolase activity Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin.
GO:0016579 protein deubiquitination The removal of one or more ubiquitin groups from a protein.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100786678 1 859 + 859 Gaps:82 99.68 928 66.49 0.0 ubiquitin carboxyl-terminal hydrolase 10-like
blastp_kegg lcl|pxb:103950706 1 861 + 861 Gaps:96 99.78 929 65.70 0.0 ubiquitin carboxyl-terminal hydrolase 9-like
blastp_kegg lcl|pop:POPTR_0001s45310g 1 862 + 862 Gaps:76 99.89 933 64.38 0.0 POPTRDRAFT_798230 ubiquitin carboxyl-terminal hydrolase family protein
blastp_kegg lcl|gmx:100807315 1 859 + 859 Gaps:76 99.68 926 66.20 0.0 ubiquitin carboxyl-terminal hydrolase 10-like
blastp_kegg lcl|pop:POPTR_0011s15570g 1 862 + 862 Gaps:79 99.89 938 64.35 0.0 POPTRDRAFT_834165 ubiquitin carboxyl-terminal hydrolase family protein
blastp_kegg lcl|cic:CICLE_v10024375mg 1 858 + 858 Gaps:59 99.55 889 65.31 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1314030 1 858 + 858 Gaps:89 99.89 938 60.19 0.0 Ubiquitin carboxyl-terminal hydrolase putative (EC:3.1.2.15)
blastp_kegg lcl|ath:AT4G10590 1 857 + 857 Gaps:109 99.56 910 60.71 0.0 UBP10 ubiquitin-specific protease 10
blastp_kegg lcl|aly:ARALYDRAFT_352131 1 861 + 861 Gaps:93 99.89 913 59.87 0.0 ubiquitin carboxyl-terminal hydrolase family protein
blastp_kegg lcl|ath:AT1G32850 21 861 + 841 Gaps:108 97.87 892 61.51 0.0 UBP11 putative ubiquitin carboxyl-terminal hydrolase 11
blastp_pdb 2y6e_F 316 848 + 533 Gaps:1 96.19 367 61.47 2e-81 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 2y6e_E 316 848 + 533 Gaps:1 96.19 367 61.47 2e-81 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 2y6e_D 316 848 + 533 Gaps:1 96.19 367 61.47 2e-81 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 2y6e_C 316 848 + 533 Gaps:1 96.19 367 61.47 2e-81 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 2y6e_B 316 848 + 533 Gaps:1 96.19 367 61.47 2e-81 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 2y6e_A 316 848 + 533 Gaps:1 96.19 367 61.47 2e-81 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 3n3k_A 307 842 + 536 Gaps:1 86.11 396 48.68 4e-51 mol:protein length:396 Ubiquitin carboxyl-terminal hydrolase 8
blastp_pdb 2gfo_A 307 842 + 536 Gaps:1 86.11 396 48.68 4e-51 mol:protein length:396 Ubiquitin carboxyl-terminal hydrolase 8
blastp_pdb 3nhe_A 316 843 + 528 Gaps:5 93.68 348 46.63 1e-42 mol:protein length:348 Ubiquitin carboxyl-terminal hydrolase 2
blastp_pdb 2hd5_A 316 854 + 539 Gaps:5 93.87 359 45.70 1e-42 mol:protein length:359 Ubiquitin carboxyl-terminal hydrolase 2
blastp_uniprot_sprot sp|Q93Y01|UBP9_ARATH 1 857 + 857 Gaps:109 99.56 910 60.71 0.0 Ubiquitin carboxyl-terminal hydrolase 9 OS Arabidopsis thaliana GN UBP9 PE 2 SV 1
blastp_uniprot_sprot sp|Q9MAQ3|UBP11_ARATH 21 861 + 841 Gaps:108 97.87 892 61.51 0.0 Putative ubiquitin carboxyl-terminal hydrolase 11 OS Arabidopsis thaliana GN UBP11 PE 3 SV 2
blastp_uniprot_sprot sp|O22207|UBP5_ARATH 21 844 + 824 Gaps:121 97.29 924 45.27 0.0 Ubiquitin carboxyl-terminal hydrolase 5 OS Arabidopsis thaliana GN UBP5 PE 1 SV 2
blastp_uniprot_sprot sp|Q9ZSB5|UBP10_ARATH 1 857 + 857 Gaps:29 90.79 923 65.63 0.0 Ubiquitin carboxyl-terminal hydrolase 10 OS Arabidopsis thaliana GN UBP10 PE 2 SV 2
blastp_uniprot_sprot sp|Q9C585|UBP8_ARATH 46 845 + 800 Gaps:149 96.79 871 44.37 0.0 Ubiquitin carboxyl-terminal hydrolase 8 OS Arabidopsis thaliana GN UBP8 PE 1 SV 2
blastp_uniprot_sprot sp|B2GUZ1|UBP4_RAT 37 848 + 812 Gaps:34 72.84 961 46.14 7e-117 Ubiquitin carboxyl-terminal hydrolase 4 OS Rattus norvegicus GN Usp4 PE 1 SV 1
blastp_uniprot_sprot sp|P35123|UBP4_MOUSE 39 848 + 810 Gaps:34 72.56 962 46.42 1e-114 Ubiquitin carboxyl-terminal hydrolase 4 OS Mus musculus GN Usp4 PE 1 SV 3
blastp_uniprot_sprot sp|F6Z5C0|UBP15_XENTR 39 844 + 806 Gaps:43 68.43 982 45.83 4e-113 Ubiquitin carboxyl-terminal hydrolase 15 OS Xenopus tropicalis GN usp15 PE 2 SV 2
blastp_uniprot_sprot sp|Q9R085|UBP15_RAT 30 844 + 815 Gaps:61 68.59 952 47.47 5e-113 Ubiquitin carboxyl-terminal hydrolase 15 OS Rattus norvegicus GN Usp15 PE 1 SV 1
blastp_uniprot_sprot sp|Q2HJE4|UBP15_BOVIN 30 844 + 815 Gaps:61 68.59 952 47.47 2e-112 Ubiquitin carboxyl-terminal hydrolase 15 OS Bos taurus GN USP15 PE 2 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 319 334 16 PS00972 none Ubiquitin specific protease (USP) domain signature 1. IPR018200
Gene3D 9 158 150 G3DSA:3.30.2230.10 none none IPR006615
PANTHER 695 844 150 PTHR24006 none none none
PANTHER 36 496 461 PTHR24006 none none none
SUPERFAMILY 697 845 149 SSF54001 none none none
SUPERFAMILY 316 502 187 SSF54001 none none none
PANTHER 695 844 150 PTHR24006:SF360 none none IPR028134
PANTHER 36 496 461 PTHR24006:SF360 none none IPR028134
Pfam 43 143 101 PF06337 none DUSP domain IPR006615
ProSiteProfiles 318 845 528 PS50235 none Ubiquitin specific protease (USP) domain profile. IPR028889
SMART 38 146 109 SM00695 none Domain in ubiquitin-specific proteases. IPR006615
SUPERFAMILY 16 143 128 SSF143791 none none IPR006615
ProSiteProfiles 19 143 125 PS51283 none DUSP domain profile. IPR006615
Pfam 318 842 525 PF00443 none Ubiquitin carboxyl-terminal hydrolase IPR001394
ProSitePatterns 787 804 18 PS00973 none Ubiquitin specific protease (USP) domain signature 2. IPR018200

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting