Protein : Qrob_P0581260.2 Q. robur
Protein Identifier  ? Qrob_P0581260.2 Organism . Name  Quercus robur
Score  93.1 Score Type  egn
Protein Description  (M=1) 6.3.4.13 - Phosphoribosylamine--glycine ligase. Code Enzyme  EC:6.3.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 471  
Kegg Orthology  K01945
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0046872 metal ion binding Interacting selectively and non-covalently with any metal ion.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0009113 purine nucleobase biosynthetic process The chemical reactions and pathways resulting in the formation of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine.
GO:0004637 phosphoribosylamine-glycine ligase activity Catalysis of the reaction: 5-phospho-D-ribosylamine + ATP + glycine = N(1)-(5-phospho-D-ribosyl)glycinamide + ADP + 2 H(+) + phosphate.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100252684 22 467 + 446 none 81.54 547 88.12 0.0 phosphoribosylamine--glycine ligase chloroplastic-like
blastp_kegg lcl|pop:POPTR_0004s23390g 25 468 + 444 Gaps:1 84.28 528 88.54 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0758770 29 468 + 440 none 82.40 534 90.45 0.0 phosphoribosylamine-glycine ligase putative (EC:6.3.4.13)
blastp_kegg lcl|tcc:TCM_006154 42 466 + 425 none 83.66 508 89.65 0.0 Glycinamide ribonucleotide (GAR) synthetase isoform 1
blastp_kegg lcl|cit:102615577 24 468 + 445 none 86.07 517 87.42 0.0 phosphoribosylamine--glycine ligase chloroplastic-like
blastp_kegg lcl|cic:CICLE_v10000877mg 42 468 + 427 none 82.43 518 88.29 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_007G182100g 30 467 + 438 none 83.11 527 86.30 0.0 hypothetical protein
blastp_kegg lcl|mtr:MTR_5g025310 25 467 + 443 Gaps:14 85.90 532 82.71 0.0 Phosphoribosylamine-glycine ligase
blastp_kegg lcl|pper:PRUPE_ppa004353mg 29 467 + 439 Gaps:2 85.63 515 88.21 0.0 hypothetical protein
blastp_kegg lcl|cmo:103493310 1 467 + 467 Gaps:4 87.99 533 80.60 0.0 phosphoribosylamine--glycine ligase
blastp_pdb 1gso_A 30 463 + 434 Gaps:4 99.77 431 51.40 6e-146 mol:protein length:431 PROTEIN (GLYCINAMIDE RIBONUCLEOTIDE SYNTHETAS
blastp_pdb 3mjf_A 34 459 + 426 Gaps:4 97.91 431 50.47 9e-145 mol:protein length:431 Phosphoribosylamine--glycine ligase
blastp_pdb 2ys7_A 34 470 + 437 Gaps:11 94.46 451 51.17 7e-138 mol:protein length:451 Phosphoribosylglycinamide synthetase
blastp_pdb 2ys6_A 34 470 + 437 Gaps:11 94.46 451 51.17 7e-138 mol:protein length:451 Phosphoribosylglycinamide synthetase
blastp_pdb 2yrx_A 34 470 + 437 Gaps:11 94.46 451 51.17 7e-138 mol:protein length:451 Phosphoribosylglycinamide synthetase
blastp_pdb 2yrw_A 34 470 + 437 Gaps:11 94.46 451 51.17 7e-138 mol:protein length:451 Phosphoribosylglycinamide synthetase
blastp_pdb 3lp8_A 34 459 + 426 Gaps:7 94.80 442 48.69 6e-137 mol:protein length:442 Phosphoribosylamine-glycine ligase
blastp_pdb 2xd4_A 34 463 + 430 Gaps:13 99.29 422 51.55 1e-126 mol:protein length:422 PHOSPHORIBOSYLAMINE--GLYCINE LIGASE
blastp_pdb 2xcl_A 34 463 + 430 Gaps:13 99.29 422 51.55 1e-126 mol:protein length:422 PHOSPHORIBOSYLAMINE--GLYCINE LIGASE
blastp_pdb 2yya_B 34 459 + 426 Gaps:11 98.35 424 47.00 2e-126 mol:protein length:424 Phosphoribosylamine--glycine ligase
blastp_uniprot_sprot sp|P52420|PUR2_ARATH 28 468 + 441 none 82.89 532 83.67 0.0 Phosphoribosylamine--glycine ligase chloroplastic OS Arabidopsis thaliana GN PUR2 PE 2 SV 2
blastp_uniprot_sprot sp|P52421|PUR2_VIGUN 159 449 + 291 none 93.57 311 85.91 9e-179 Phosphoribosylamine--glycine ligase (Fragment) OS Vigna unguiculata GN PUR2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8UHN3|PUR2_AGRT5 34 463 + 430 Gaps:10 99.29 423 58.10 2e-162 Phosphoribosylamine--glycine ligase OS Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN purD PE 3 SV 2
blastp_uniprot_sprot sp|Q986A5|PUR2_RHILO 34 463 + 430 Gaps:9 99.06 425 57.72 2e-161 Phosphoribosylamine--glycine ligase OS Rhizobium loti (strain MAFF303099) GN purD PE 3 SV 1
blastp_uniprot_sprot sp|Q92RL0|PUR2_RHIME 34 462 + 429 Gaps:10 99.05 423 59.19 5e-161 Phosphoribosylamine--glycine ligase OS Rhizobium meliloti (strain 1021) GN purD PE 1 SV 1
blastp_uniprot_sprot sp|Q8G2B1|PUR2_BRUSU 34 463 + 430 Gaps:8 98.83 427 58.06 2e-158 Phosphoribosylamine--glycine ligase OS Brucella suis biovar 1 (strain 1330) GN purD PE 3 SV 1
blastp_uniprot_sprot sp|Q8YFK1|PUR2_BRUME 34 463 + 430 Gaps:8 98.83 427 57.82 2e-157 Phosphoribosylamine--glycine ligase OS Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN purD PE 3 SV 1
blastp_uniprot_sprot sp|Q8DD07|PUR2_VIBVU 34 463 + 430 Gaps:5 99.07 429 51.76 7e-153 Phosphoribosylamine--glycine ligase OS Vibrio vulnificus (strain CMCP6) GN purD PE 3 SV 1
blastp_uniprot_sprot sp|Q7MGT4|PUR2_VIBVY 34 463 + 430 Gaps:5 99.07 429 51.76 3e-152 Phosphoribosylamine--glycine ligase OS Vibrio vulnificus (strain YJ016) GN purD PE 3 SV 2
blastp_uniprot_sprot sp|Q9KV81|PUR2_VIBCH 34 463 + 430 Gaps:5 99.07 429 52.00 7e-152 Phosphoribosylamine--glycine ligase OS Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN purD PE 3 SV 1

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 8 8 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 364 459 96 G3DSA:3.90.600.10 "KEGG:00230+6.3.4.13","MetaCyc:PWY-6121","MetaCyc:PWY-6122","MetaCyc:PWY-6277","UniPathway:UPA00074" none IPR020560
Hamap 32 459 428 MF_00138 "KEGG:00230+6.3.4.13","MetaCyc:PWY-6121","MetaCyc:PWY-6122","MetaCyc:PWY-6277","UniPathway:UPA00074" Phosphoribosylamine--glycine ligase [purD]. IPR000115
SUPERFAMILY 33 135 103 SSF52440 none none IPR016185
Gene3D 153 222 70 G3DSA:3.30.1490.20 none none IPR013815
ProSiteProfiles 141 349 209 PS50975 none ATP-grasp fold profile. IPR011761
Pfam 135 329 195 PF01071 "KEGG:00230+6.3.4.13","MetaCyc:PWY-6121","MetaCyc:PWY-6122","MetaCyc:PWY-6277","UniPathway:UPA00074" Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain IPR020561
Phobius 29 470 442 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 362 459 98 SSF51246 none none IPR011054
Pfam 364 459 96 PF02843 "KEGG:00230+6.3.4.13","MetaCyc:PWY-6121","MetaCyc:PWY-6122","MetaCyc:PWY-6277","UniPathway:UPA00074" Phosphoribosylglycinamide synthetase, C domain IPR020560
Pfam 34 134 101 PF02844 "KEGG:00230+6.3.4.13","MetaCyc:PWY-6121","MetaCyc:PWY-6122","MetaCyc:PWY-6277","UniPathway:UPA00074" Phosphoribosylglycinamide synthetase, N domain IPR020562
SUPERFAMILY 136 359 224 SSF56059 none none none
ProSitePatterns 323 330 8 PS00184 "KEGG:00230+6.3.4.13","MetaCyc:PWY-6121","MetaCyc:PWY-6122","MetaCyc:PWY-6277","UniPathway:UPA00074" Phosphoribosylglycinamide synthetase signature. IPR020559
TIGRFAM 34 459 426 TIGR00877 "KEGG:00230+6.3.4.13","MetaCyc:PWY-6121","MetaCyc:PWY-6122","MetaCyc:PWY-6277","UniPathway:UPA00074" purD: phosphoribosylamine--glycine ligase IPR000115
Gene3D 34 127 94 G3DSA:3.40.50.20 none none IPR016185
Phobius 9 28 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 32 463 432 PTHR10520:SF22 none none none
Gene3D 223 361 139 G3DSA:3.30.470.20 none none IPR013816
PANTHER 32 463 432 PTHR10520 none none none

1 Localization

Analysis Start End Length
SignalP_EUK 1 29 28

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9

0 Targeting