Protein : Qrob_P0578250.2 Q. robur
Protein Identifier  ? Qrob_P0578250.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) 3.4.24.17 - Stromelysin 1. Code Enzyme  EC:3.4.24.17
Gene Prediction Quality  validated Protein length 

Sequence

Length: 285  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0004222 metalloendopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO:0031012 extracellular matrix A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals and bacteria) or be part of the cell (as in plants).
GO:0008237 metallopeptidase activity Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_044196 1 283 + 283 Gaps:31 99.68 311 61.29 2e-124 Matrixin family protein
blastp_kegg lcl|tcc:TCM_046068 1 283 + 283 Gaps:31 99.68 311 61.29 2e-124 Matrixin family protein
blastp_kegg lcl|tcc:TCM_044201 1 283 + 283 Gaps:31 99.68 311 60.97 5e-124 Matrixin family protein
blastp_kegg lcl|cit:102627001 1 283 + 283 Gaps:38 99.69 320 58.62 1e-121 metalloendoproteinase 1-like
blastp_kegg lcl|rcu:RCOM_0852690 30 283 + 254 Gaps:30 89.39 311 64.75 3e-121 Metalloendoproteinase 1 precursor putative (EC:3.4.24.7)
blastp_kegg lcl|vvi:100257851 20 283 + 264 Gaps:27 92.38 315 60.82 1e-114 metalloendoproteinase 1-like
blastp_kegg lcl|tcc:TCM_040549 26 283 + 258 Gaps:29 91.29 310 60.42 3e-114 Matrixin family protein putative
blastp_kegg lcl|pmum:103330186 2 283 + 282 Gaps:39 98.39 310 58.36 6e-114 metalloendoproteinase 1-like
blastp_kegg lcl|pmum:103330192 1 283 + 283 Gaps:36 99.68 314 61.02 7e-113 metalloendoproteinase 1-like
blastp_kegg lcl|mdm:103416527 1 283 + 283 Gaps:41 99.68 309 58.77 6e-112 metalloendoproteinase 1-like
blastp_pdb 1slm_A 41 282 + 242 Gaps:66 95.69 255 37.30 3e-26 mol:protein length:255 STROMELYSIN-1
blastp_pdb 1su3_B 53 282 + 230 Gaps:62 51.11 450 33.91 2e-21 mol:protein length:450 Interstitial collagenase
blastp_pdb 1su3_A 53 282 + 230 Gaps:62 51.11 450 33.91 2e-21 mol:protein length:450 Interstitial collagenase
blastp_pdb 1hov_A 150 282 + 133 Gaps:34 98.77 163 39.75 3e-20 mol:protein length:163 MATRIX METALLOPROTEINASE-2
blastp_pdb 3ayu_A 150 282 + 133 Gaps:35 97.01 167 38.89 7e-19 mol:protein length:167 72 kDa type IV collagenase
blastp_pdb 2xs4_A 174 284 + 111 Gaps:31 83.83 167 36.43 1e-18 mol:protein length:167 KARILYSIN PROTEASE
blastp_pdb 2xs3_B 174 284 + 111 Gaps:31 84.34 166 36.43 1e-18 mol:protein length:166 KARILYSIN PROTEASE
blastp_pdb 2xs3_A 174 284 + 111 Gaps:31 84.34 166 36.43 1e-18 mol:protein length:166 KARILYSIN PROTEASE
blastp_pdb 1kbc_B 154 282 + 129 Gaps:36 96.95 164 37.74 3e-18 mol:protein length:164 NEUTROPHIL COLLAGENASE
blastp_pdb 1kbc_A 154 282 + 129 Gaps:36 96.95 164 37.74 3e-18 mol:protein length:164 NEUTROPHIL COLLAGENASE
blastp_uniprot_sprot sp|P29136|MEP1_SOYBN 45 282 + 238 Gaps:54 83.93 305 41.02 3e-47 Metalloendoproteinase 1 OS Glycine max PE 1 SV 2
blastp_uniprot_sprot sp|P08254|MMP3_HUMAN 41 282 + 242 Gaps:66 51.15 477 37.30 4e-25 Stromelysin-1 OS Homo sapiens GN MMP3 PE 1 SV 2
blastp_uniprot_sprot sp|P91953|HE_HEMPU 51 282 + 232 Gaps:72 38.58 591 38.60 6e-25 50 kDa hatching enzyme OS Hemicentrotus pulcherrimus PE 1 SV 1
blastp_uniprot_sprot sp|O70138|MMP8_MOUSE 10 282 + 273 Gaps:78 56.13 465 35.25 3e-24 Neutrophil collagenase OS Mus musculus GN Mmp8 PE 2 SV 2
blastp_uniprot_sprot sp|P22894|MMP8_HUMAN 54 282 + 229 Gaps:68 49.46 467 38.10 3e-24 Neutrophil collagenase OS Homo sapiens GN MMP8 PE 1 SV 1
blastp_uniprot_sprot sp|P79287|MMP20_PIG 90 282 + 193 Gaps:64 41.20 483 39.20 7e-24 Matrix metalloproteinase-20 OS Sus scrofa GN MMP20 PE 2 SV 1
blastp_uniprot_sprot sp|O60882|MMP20_HUMAN 54 282 + 229 Gaps:63 48.03 483 35.34 8e-24 Matrix metalloproteinase-20 OS Homo sapiens GN MMP20 PE 1 SV 3
blastp_uniprot_sprot sp|P28863|MMP3_RABIT 41 282 + 242 Gaps:65 51.26 478 34.69 6e-23 Stromelysin-1 OS Oryctolagus cuniculus GN MMP3 PE 2 SV 1
blastp_uniprot_sprot sp|O18767|MMP20_BOVIN 90 282 + 193 Gaps:64 41.37 481 38.69 7e-23 Matrix metalloproteinase-20 OS Bos taurus GN MMP20 PE 1 SV 1
blastp_uniprot_sprot sp|P09238|MMP10_HUMAN 41 282 + 242 Gaps:67 51.05 476 36.21 8e-23 Stromelysin-2 OS Homo sapiens GN MMP10 PE 1 SV 1

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 20 20 SIGNAL_PEPTIDE none Signal peptide region none
SUPERFAMILY 44 123 80 SSF47090 none none IPR002477
Phobius 21 284 264 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PRINTS 113 126 14 PR00138 none Matrixin signature IPR021190
PRINTS 237 262 26 PR00138 none Matrixin signature IPR021190
PRINTS 270 283 14 PR00138 none Matrixin signature IPR021190
Pfam 52 111 60 PF01471 none Putative peptidoglycan binding domain IPR002477
Phobius 1 4 4 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PANTHER 45 282 238 PTHR10201 none none none
Gene3D 115 283 169 G3DSA:3.40.390.10 none none IPR024079
SUPERFAMILY 152 283 132 SSF55486 none none none
SMART 155 284 130 SM00235 none Zinc-dependent metalloprotease IPR006026
Phobius 5 16 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Pfam 231 282 52 PF00413 none Matrixin IPR001818
Pfam 179 226 48 PF00413 none Matrixin IPR001818
Phobius 17 20 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Gene3D 53 114 62 G3DSA:1.10.101.10 none none IPR002477

3 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 22 21
SignalP_GRAM_NEGATIVE 1 22 21
SignalP_EUK 1 22 21

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7

0 Targeting