Protein : Qrob_P0573140.2 Q. robur
Protein Identifier  ? Qrob_P0573140.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) 3.4.24.34 - Neutrophil collagenase. Code Enzyme  EC:3.4.24.34
Gene Prediction Quality  validated Protein length 

Sequence

Length: 179  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0004222 metalloendopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO:0031012 extracellular matrix A structure lying external to one or more cells, which provides structural support for cells or tissues; may be completely external to the cell (as in animals and bacteria) or be part of the cell (as in plants).
GO:0008237 metallopeptidase activity Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101291039 1 177 + 177 Gaps:22 63.31 308 62.05 8e-76 metalloendoproteinase 1-like
blastp_kegg lcl|rcu:RCOM_0852690 1 177 + 177 Gaps:21 63.67 311 61.11 1e-74 Metalloendoproteinase 1 precursor putative (EC:3.4.24.7)
blastp_kegg lcl|vvi:100262981 1 177 + 177 Gaps:21 61.68 321 60.61 5e-74 metalloendoproteinase 1-like
blastp_kegg lcl|fve:101291617 1 177 + 177 Gaps:22 63.31 308 61.54 1e-73 metalloendoproteinase 1-like
blastp_kegg lcl|pper:PRUPE_ppa011783mg 1 177 + 177 Gaps:22 99.49 196 58.97 2e-71 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa014830mg 1 177 + 177 Gaps:2 60.47 296 64.80 7e-71 hypothetical protein
blastp_kegg lcl|tcc:TCM_040549 1 177 + 177 Gaps:21 63.87 310 57.58 1e-69 Matrixin family protein putative
blastp_kegg lcl|pmum:103330190 1 177 + 177 Gaps:19 62.62 313 59.18 2e-69 metalloendoproteinase 1-like
blastp_kegg lcl|pmum:103330192 1 177 + 177 Gaps:21 63.06 314 59.60 3e-69 metalloendoproteinase 1-like
blastp_kegg lcl|vvi:100257851 1 177 + 177 Gaps:20 62.54 315 59.39 3e-69 metalloendoproteinase 1-like
blastp_pdb 1bzs_A 43 176 + 134 Gaps:32 95.76 165 39.24 4e-23 mol:protein length:165 NEUTROPHIL COLLAGENASE
blastp_pdb 3dpf_B 43 176 + 134 Gaps:32 96.93 163 39.24 4e-23 mol:protein length:163 Neutrophil collagenase
blastp_pdb 3dpf_A 43 176 + 134 Gaps:32 96.93 163 39.24 4e-23 mol:protein length:163 Neutrophil collagenase
blastp_pdb 3dpe_A 43 176 + 134 Gaps:32 96.93 163 39.24 4e-23 mol:protein length:163 Neutrophil collagenase
blastp_pdb 3dng_B 43 176 + 134 Gaps:32 96.93 163 39.24 4e-23 mol:protein length:163 Neutrophil collagenase
blastp_pdb 3dng_A 43 176 + 134 Gaps:32 96.93 163 39.24 4e-23 mol:protein length:163 Neutrophil collagenase
blastp_pdb 1zvx_A 43 176 + 134 Gaps:32 96.93 163 39.24 4e-23 mol:protein length:163 Neutrophil collagenase
blastp_pdb 1zs0_A 43 176 + 134 Gaps:32 96.93 163 39.24 4e-23 mol:protein length:163 Neutrophil collagenase
blastp_pdb 1zp5_A 43 176 + 134 Gaps:32 96.93 163 39.24 4e-23 mol:protein length:163 Neutrophil collagenase
blastp_pdb 1mmb_A 43 176 + 134 Gaps:32 96.93 163 39.24 4e-23 mol:protein length:163 MATRIX METALLOPROTEINASE-8
blastp_uniprot_sprot sp|P29136|MEP1_SOYBN 1 176 + 176 Gaps:40 63.61 305 45.88 7e-41 Metalloendoproteinase 1 OS Glycine max PE 1 SV 2
blastp_uniprot_sprot sp|P22894|MMP8_HUMAN 61 176 + 116 Gaps:7 25.48 467 43.70 1e-21 Neutrophil collagenase OS Homo sapiens GN MMP8 PE 1 SV 1
blastp_uniprot_sprot sp|O60882|MMP20_HUMAN 1 176 + 176 Gaps:12 36.44 483 35.23 3e-21 Matrix metalloproteinase-20 OS Homo sapiens GN MMP20 PE 1 SV 3
blastp_uniprot_sprot sp|P79287|MMP20_PIG 4 176 + 173 Gaps:12 35.82 483 35.84 2e-20 Matrix metalloproteinase-20 OS Sus scrofa GN MMP20 PE 2 SV 1
blastp_uniprot_sprot sp|O18767|MMP20_BOVIN 4 176 + 173 Gaps:12 35.97 481 35.84 6e-20 Matrix metalloproteinase-20 OS Bos taurus GN MMP20 PE 1 SV 1
blastp_uniprot_sprot sp|P91953|HE_HEMPU 70 176 + 107 Gaps:6 18.10 591 42.99 8e-20 50 kDa hatching enzyme OS Hemicentrotus pulcherrimus PE 1 SV 1
blastp_uniprot_sprot sp|P08254|MMP3_HUMAN 35 176 + 142 Gaps:33 35.01 477 38.32 9e-20 Stromelysin-1 OS Homo sapiens GN MMP3 PE 1 SV 2
blastp_uniprot_sprot sp|P28863|MMP3_RABIT 35 176 + 142 Gaps:33 34.94 478 37.72 9e-20 Stromelysin-1 OS Oryctolagus cuniculus GN MMP3 PE 2 SV 1
blastp_uniprot_sprot sp|P03956|MMP1_HUMAN 1 176 + 176 Gaps:54 37.10 469 37.93 1e-19 Interstitial collagenase OS Homo sapiens GN MMP1 PE 1 SV 3
blastp_uniprot_sprot sp|Q6Y4Q5|MMP3_CANFA 35 176 + 142 Gaps:33 34.94 478 37.72 2e-19 Stromelysin-1 OS Canis familiaris GN MMP3 PE 2 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 176 176 PTHR10201 none none none
Pfam 68 176 109 PF00413 none Matrixin IPR001818
PANTHER 1 176 176 PTHR10201:SF116 none none none
SUPERFAMILY 40 177 138 SSF55486 none none none
SMART 43 178 136 SM00235 none Zinc-dependent metalloprotease IPR006026
Gene3D 1 177 177 G3DSA:3.40.390.10 none none IPR024079
PRINTS 164 177 14 PR00138 none Matrixin signature IPR021190
PRINTS 74 102 29 PR00138 none Matrixin signature IPR021190
PRINTS 1 11 11 PR00138 none Matrixin signature IPR021190
PRINTS 131 156 26 PR00138 none Matrixin signature IPR021190

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7

0 Targeting