Protein : Qrob_P0568790.2 Q. robur
Protein Identifier  ? Qrob_P0568790.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) 1.17.4.2 - Ribonucleoside-triphosphate reductase. Code Enzyme  EC:1.17.4.2, EC:1.17.4.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 342  
Kegg Orthology  K10808
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0009186 deoxyribonucleoside diphosphate metabolic process The chemical reactions and pathways involving a deoxyribonucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with diphosphate on the sugar.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0008s20600g 1 341 + 341 Gaps:1 100.00 342 85.38 0.0 POPTRDRAFT_872567 Ribonucleoside-diphosphate reductase small chain family protein
blastp_kegg lcl|cit:102624257 1 341 + 341 Gaps:7 100.00 348 85.06 0.0 ribonucleoside-diphosphate reductase small chain A-like
blastp_kegg lcl|rcu:RCOM_0678140 1 341 + 341 Gaps:1 100.00 342 87.43 0.0 ribonucleoside-diphosphate reductase small chain putative (EC:1.17.4.1)
blastp_kegg lcl|cic:CICLE_v10005323mg 1 341 + 341 Gaps:7 100.00 348 84.77 0.0 hypothetical protein
blastp_kegg lcl|vvi:100263189 1 341 + 341 Gaps:1 100.00 340 85.00 0.0 ribonucleoside-diphosphate reductase small chain A-like
blastp_kegg lcl|pxb:103955618 1 341 + 341 Gaps:4 100.00 345 84.35 0.0 ribonucleoside-diphosphate reductase small chain A-like
blastp_kegg lcl|pxb:103943543 1 341 + 341 Gaps:4 100.00 345 84.35 0.0 ribonucleoside-diphosphate reductase small chain A-like
blastp_kegg lcl|mdm:103453059 1 341 + 341 Gaps:4 100.00 345 84.35 0.0 ribonucleoside-diphosphate reductase small chain A-like
blastp_kegg lcl|pper:PRUPE_ppa008063mg 1 341 + 341 Gaps:6 100.00 347 84.73 0.0 hypothetical protein
blastp_kegg lcl|pmum:103322854 1 341 + 341 Gaps:6 100.00 347 84.44 0.0 ribonucleoside-diphosphate reductase small chain A
blastp_pdb 1xsm_A 12 341 + 330 Gaps:5 83.85 390 64.22 1e-150 mol:protein length:390 RIBONUCLEOTIDE REDUCTASE R2
blastp_pdb 1w69_A 12 341 + 330 Gaps:5 83.85 390 64.22 1e-150 mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 CHAIN
blastp_pdb 1w68_A 12 341 + 330 Gaps:5 83.85 390 64.22 1e-150 mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 CHAIN
blastp_pdb 1h0o_A 12 341 + 330 Gaps:5 83.85 390 64.22 1e-150 mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
blastp_pdb 1h0n_A 12 341 + 330 Gaps:5 83.85 390 64.22 1e-150 mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
blastp_pdb 2uw2_A 16 341 + 326 Gaps:5 97.29 332 64.71 1e-149 mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUN
blastp_pdb 3hf1_B 16 341 + 326 Gaps:5 92.02 351 63.78 6e-149 mol:protein length:351 Ribonucleoside-diphosphate reductase subunit
blastp_pdb 3hf1_A 16 341 + 326 Gaps:5 92.02 351 63.78 6e-149 mol:protein length:351 Ribonucleoside-diphosphate reductase subunit
blastp_pdb 2p1i_H 19 341 + 323 Gaps:4 91.40 349 62.70 1e-145 mol:protein length:349 Ribonucleotide reductase small chain
blastp_pdb 2p1i_G 19 341 + 323 Gaps:4 91.40 349 62.70 1e-145 mol:protein length:349 Ribonucleotide reductase small chain
blastp_uniprot_sprot sp|P50651|RIR2A_ARATH 1 341 + 341 none 100.00 341 78.59 0.0 Ribonucleoside-diphosphate reductase small chain A OS Arabidopsis thaliana GN RNR2A PE 1 SV 2
blastp_uniprot_sprot sp|P49730|RIR2_TOBAC 18 341 + 324 none 98.48 329 75.00 3e-180 Ribonucleoside-diphosphate reductase small chain OS Nicotiana tabacum PE 2 SV 1
blastp_uniprot_sprot sp|Q6Y657|RIR2B_ARATH 18 341 + 324 Gaps:4 98.50 333 73.17 9e-178 Putative ribonucleoside-diphosphate reductase small chain B OS Arabidopsis thaliana GN RNR2B PE 5 SV 1
blastp_uniprot_sprot sp|Q9LSD0|RIR2C_ARATH 18 341 + 324 Gaps:3 98.49 332 74.31 3e-171 Ribonucleoside-diphosphate reductase small chain C OS Arabidopsis thaliana GN TSO2 PE 2 SV 1
blastp_uniprot_sprot sp|P07201|RIR2_SPISO 4 341 + 338 Gaps:2 88.02 384 64.50 1e-155 Ribonucleoside-diphosphate reductase small chain OS Spisula solidissima PE 2 SV 2
blastp_uniprot_sprot sp|P79733|RIR2_DANRE 17 341 + 325 Gaps:5 83.42 386 67.08 3e-155 Ribonucleoside-diphosphate reductase subunit M2 OS Danio rerio GN rrm2 PE 1 SV 1
blastp_uniprot_sprot sp|O15910|RIR2_TRYBB 18 341 + 324 Gaps:4 95.55 337 65.53 6e-154 Ribonucleoside-diphosphate reductase small chain OS Trypanosoma brucei brucei GN RNR2 PE 2 SV 1
blastp_uniprot_sprot sp|Q4KLN6|RIR2_RAT 12 341 + 330 Gaps:5 83.85 390 64.53 6e-151 Ribonucleoside-diphosphate reductase subunit M2 OS Rattus norvegicus GN Rrm2 PE 2 SV 1
blastp_uniprot_sprot sp|Q60561|RIR2_MESAU 12 341 + 330 Gaps:9 83.68 386 65.33 3e-150 Ribonucleoside-diphosphate reductase subunit M2 OS Mesocricetus auratus GN RRM2 PE 2 SV 1
blastp_uniprot_sprot sp|P11157|RIR2_MOUSE 12 341 + 330 Gaps:5 83.85 390 64.22 4e-150 Ribonucleoside-diphosphate reductase subunit M2 OS Mus musculus GN Rrm2 PE 1 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 15 301 287 G3DSA:1.10.620.20 "Reactome:REACT_1698" none IPR012348
Phobius 195 341 147 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 173 194 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 17 341 325 PTHR23409:SF17 none none none
Pfam 20 299 280 PF00268 "KEGG:00230+1.17.4.1","KEGG:00240+1.17.4.1","KEGG:00480+1.17.4.1","MetaCyc:PWY-6545","MetaCyc:PWY-7184","MetaCyc:PWY-7198","MetaCyc:PWY-7210","MetaCyc:PWY-7220","MetaCyc:PWY-7222","MetaCyc:PWY-7226","MetaCyc:PWY-7227","Reactome:REACT_1698","UniPathway:UPA00326" Ribonucleotide reductase, small chain IPR000358
Phobius 1 172 172 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 17 341 325 PTHR23409 "KEGG:00230+1.17.4.1","KEGG:00240+1.17.4.1","KEGG:00480+1.17.4.1","MetaCyc:PWY-6545","MetaCyc:PWY-7184","MetaCyc:PWY-7198","MetaCyc:PWY-7210","MetaCyc:PWY-7220","MetaCyc:PWY-7222","MetaCyc:PWY-7226","MetaCyc:PWY-7227","Reactome:REACT_1698","UniPathway:UPA00326";signature_desc=RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN none IPR000358
SUPERFAMILY 14 319 306 SSF47240 none none IPR009078

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting