Protein : Qrob_P0563570.2 Q. robur
Protein Identifier  ? Qrob_P0563570.2 Organism . Name  Quercus robur
Score  87.1 Score Type  egn
Protein Description  (M=2) K04485 - DNA repair protein RadA/Sms Code Enzyme  EC:3.4.21.53
Gene Prediction Quality  validated Protein length 

Sequence

Length: 285  
Kegg Orthology  K04485
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0003684 damaged DNA binding Interacting selectively and non-covalently with damaged DNA.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102628276 7 281 + 275 Gaps:31 42.54 583 83.47 2e-133 uncharacterized LOC102628276
blastp_kegg lcl|cic:CICLE_v10025165mg 7 281 + 275 Gaps:31 39.87 622 83.47 4e-133 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s19200g 7 283 + 277 Gaps:31 39.12 639 80.00 1e-132 POPTRDRAFT_1067679 hypothetical protein
blastp_kegg lcl|gmx:100794165 7 281 + 275 Gaps:31 44.29 560 80.65 8e-130 uncharacterized LOC100794165
blastp_kegg lcl|vvi:100258398 7 281 + 275 Gaps:31 39.74 624 81.05 1e-128 DNA repair protein RadA homolog
blastp_kegg lcl|cam:101492041 7 281 + 275 Gaps:31 44.13 562 79.03 7e-128 DNA repair protein RadA homolog
blastp_kegg lcl|pmum:103327813 7 282 + 276 Gaps:31 38.60 645 79.12 4e-127 uncharacterized LOC103327813
blastp_kegg lcl|tcc:TCM_028919 7 284 + 278 Gaps:31 39.53 635 79.28 2e-126 ATP-dependent peptidases nucleotide binding serine-type endopeptidases DNA helicases ATP binding damaged DNA binding nucleoside-triphosphatases isoform 1
blastp_kegg lcl|sot:102603127 7 282 + 276 Gaps:31 41.99 593 79.12 2e-126 uncharacterized LOC102603127
blastp_kegg lcl|mtr:MTR_8g014670 7 281 + 275 Gaps:31 38.57 643 77.42 2e-125 DNA repair protein radA-like protein
blastp_uniprot_sprot sp|P37572|RADA_BACSU 7 279 + 273 Gaps:38 53.06 458 47.33 7e-59 DNA repair protein RadA homolog OS Bacillus subtilis (strain 168) GN radA PE 3 SV 1
blastp_uniprot_sprot sp|Q9KGG1|RADA_BACHD 7 281 + 275 Gaps:40 53.61 457 44.49 8e-56 DNA repair protein RadA homolog OS Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN radA PE 3 SV 1
blastp_uniprot_sprot sp|Q48761|RADA_LISMO 7 254 + 248 Gaps:36 48.14 457 48.18 8e-55 DNA repair protein RadA homolog OS Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN radA PE 3 SV 2
blastp_uniprot_sprot sp|Q92F42|RADA_LISIN 7 254 + 248 Gaps:36 48.14 457 48.18 1e-54 DNA repair protein RadA homolog OS Listeria innocua serovar 6a (strain CLIP 11262) GN radA PE 3 SV 1
blastp_uniprot_sprot sp|P0DD79|RADA_STRPQ 7 263 + 257 Gaps:37 50.77 453 47.83 3e-54 DNA repair protein RadA homolog OS Streptococcus pyogenes serotype M3 (strain SSI-1) GN radA PE 3 SV 1
blastp_uniprot_sprot sp|P0DD78|RADA_STRP3 7 263 + 257 Gaps:37 50.77 453 47.83 3e-54 DNA repair protein RadA homolog OS Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN radA PE 3 SV 1
blastp_uniprot_sprot sp|Q9A1K1|RADA_STRP1 7 281 + 275 Gaps:38 54.08 453 46.53 5e-54 DNA repair protein RadA homolog OS Streptococcus pyogenes serotype M1 GN radA PE 3 SV 1
blastp_uniprot_sprot sp|Q8P2Q5|RADA_STRP8 7 253 + 247 Gaps:36 48.34 453 48.86 6e-54 DNA repair protein RadA homolog OS Streptococcus pyogenes serotype M18 (strain MGAS8232) GN radA PE 3 SV 1
blastp_uniprot_sprot sp|Q5XDZ7|RADA_STRP6 7 253 + 247 Gaps:36 48.34 453 48.86 6e-54 DNA repair protein RadA homolog OS Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN radA PE 3 SV 1
blastp_uniprot_sprot sp|P96963|RADA_PSEAE 7 281 + 275 Gaps:45 53.86 453 45.90 2e-53 DNA repair protein RadA homolog OS Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN radA PE 3 SV 2
rpsblast_cdd gnl|CDD|183326 7 283 + 277 Gaps:39 55.16 446 49.59 1e-84 PRK11823 PRK11823 DNA repair protein RadA Provisional.
rpsblast_cdd gnl|CDD|31265 7 282 + 276 Gaps:41 53.29 456 49.79 2e-69 COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|161868 7 277 + 271 Gaps:39 52.86 454 46.25 7e-64 TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins peptides glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
rpsblast_cdd gnl|CDD|29987 7 205 + 199 Gaps:34 45.43 372 55.62 3e-57 cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules..
rpsblast_cdd gnl|CDD|131948 121 281 + 161 Gaps:24 33.71 531 26.26 2e-11 TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB a paralog of the ATP-dependent protease La (LonA TIGR00763). LonB proteins are found strictly and almost universally in endospore-forming bacteria. This protease was shown in Bacillus subtilis to be expressed specifically in the forespore during sporulation under control of sigma(F). The lonB gene despite location immediately upstream of lonA was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 7 58 52 PTHR32472 none none none
Gene3D 117 281 165 G3DSA:3.30.230.10 none none IPR014721
PANTHER 7 58 52 PTHR32472:SF10 none none none
Gene3D 7 58 52 G3DSA:3.40.50.300 none none IPR027417
SUPERFAMILY 130 281 152 SSF54211 none none IPR020568
SUPERFAMILY 7 61 55 SSF52540 none none IPR027417
PANTHER 88 283 196 PTHR32472 none none none
PRINTS 8 36 29 PR01874 none DNA repair protein radA signature IPR004504
PRINTS 43 69 27 PR01874 none DNA repair protein radA signature IPR004504
PANTHER 88 283 196 PTHR32472:SF10 none none none
Pfam 163 252 90 PF13541 none Subunit ChlI of Mg-chelatase none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting