Protein : Qrob_P0548540.2 Q. robur
Protein Identifier  ? Qrob_P0548540.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) 1.1.1.27 - L-lactate dehydrogenase. Code Enzyme  EC:1.1.1.27
Gene Prediction Quality  validated Protein length 

Sequence

Length: 351  
Kegg Orthology  K00016
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

8 GO Terms

Identifier Name Description
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
GO:0019752 carboxylic acid metabolic process The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
GO:0004459 L-lactate dehydrogenase activity Catalysis of the reaction: (S)-lactate + NAD+ = pyruvate + NADH + H+.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100250615 1 350 + 350 none 100.00 350 87.71 0.0 L-lactate dehydrogenase A-like
blastp_kegg lcl|mdm:103403474 1 350 + 350 none 98.59 355 87.14 0.0 L-lactate dehydrogenase B
blastp_kegg lcl|cit:102614633 1 350 + 350 none 100.00 350 86.00 0.0 L-lactate dehydrogenase A-like
blastp_kegg lcl|cic:CICLE_v10020910mg 1 350 + 350 none 100.00 350 85.71 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_015995 1 350 + 350 none 100.00 350 86.29 0.0 Lactate/malate dehydrogenase family protein
blastp_kegg lcl|mtr:MTR_5g012390 1 350 + 350 none 100.00 350 84.86 0.0 L-lactate dehydrogenase
blastp_kegg lcl|rcu:RCOM_0540790 1 350 + 350 none 100.00 350 84.00 0.0 l-lactate dehydrogenase putative (EC:1.1.1.27)
blastp_kegg lcl|gmx:100818856 1 350 + 350 none 99.43 352 85.71 0.0 L-lactate dehydrogenase A-like
blastp_kegg lcl|rcu:RCOM_0540800 1 350 + 350 none 100.00 350 84.57 0.0 l-lactate dehydrogenase putative (EC:1.1.1.27)
blastp_kegg lcl|cam:101498137 1 350 + 350 none 100.00 350 84.29 0.0 L-lactate dehydrogenase A-like
blastp_pdb 4aj4_D 37 348 + 312 Gaps:1 93.67 332 54.98 9e-120 mol:protein length:332 L-LACTATE DEHYDROGENASE A CHAIN
blastp_pdb 4aj4_C 37 348 + 312 Gaps:1 93.67 332 54.98 9e-120 mol:protein length:332 L-LACTATE DEHYDROGENASE A CHAIN
blastp_pdb 4aj4_B 37 348 + 312 Gaps:1 93.67 332 54.98 9e-120 mol:protein length:332 L-LACTATE DEHYDROGENASE A CHAIN
blastp_pdb 4aj4_A 37 348 + 312 Gaps:1 93.67 332 54.98 9e-120 mol:protein length:332 L-LACTATE DEHYDROGENASE A CHAIN
blastp_pdb 4al4_D 37 348 + 312 Gaps:1 93.96 331 54.98 1e-119 mol:protein length:331 L-LACTATE DEHYDROGENASE A CHAIN
blastp_pdb 4al4_C 37 348 + 312 Gaps:1 93.96 331 54.98 1e-119 mol:protein length:331 L-LACTATE DEHYDROGENASE A CHAIN
blastp_pdb 4al4_B 37 348 + 312 Gaps:1 93.96 331 54.98 1e-119 mol:protein length:331 L-LACTATE DEHYDROGENASE A CHAIN
blastp_pdb 4al4_A 37 348 + 312 Gaps:1 93.96 331 54.98 1e-119 mol:protein length:331 L-LACTATE DEHYDROGENASE A CHAIN
blastp_pdb 4ajo_D 37 348 + 312 Gaps:1 93.96 331 54.98 1e-119 mol:protein length:331 L-LACTATE DEHYDROGENASE A CHAIN
blastp_pdb 4ajo_C 37 348 + 312 Gaps:1 93.96 331 54.98 1e-119 mol:protein length:331 L-LACTATE DEHYDROGENASE A CHAIN
blastp_uniprot_sprot sp|P22988|LDHA_HORVU 1 343 + 343 Gaps:8 98.03 356 67.91 1e-165 L-lactate dehydrogenase A OS Hordeum vulgare PE 1 SV 1
blastp_uniprot_sprot sp|P22989|LDHB_HORVU 16 350 + 335 Gaps:7 99.42 344 66.67 2e-162 L-lactate dehydrogenase B (Fragment) OS Hordeum vulgare PE 1 SV 1
blastp_uniprot_sprot sp|P29038|LDH_MAIZE 1 350 + 350 Gaps:6 100.00 354 64.41 2e-146 L-lactate dehydrogenase OS Zea mays PE 2 SV 1
blastp_uniprot_sprot sp|P06151|LDHA_MOUSE 37 348 + 312 Gaps:1 93.67 332 55.63 3e-120 L-lactate dehydrogenase A chain OS Mus musculus GN Ldha PE 1 SV 3
blastp_uniprot_sprot sp|Q9XT87|LDHA_MONDO 37 348 + 312 Gaps:1 93.67 332 54.98 4e-120 L-lactate dehydrogenase A chain OS Monodelphis domestica GN LDHA PE 2 SV 3
blastp_uniprot_sprot sp|Q98SL0|LDHA_PELSJ 25 348 + 324 Gaps:1 97.29 332 52.32 1e-119 L-lactate dehydrogenase A chain OS Pelodiscus sinensis japonicus GN LDHA PE 2 SV 3
blastp_uniprot_sprot sp|P04642|LDHA_RAT 37 348 + 312 Gaps:1 93.67 332 54.98 3e-119 L-lactate dehydrogenase A chain OS Rattus norvegicus GN Ldha PE 1 SV 1
blastp_uniprot_sprot sp|Q9PT43|LDHA_TRASC 25 348 + 324 Gaps:1 97.29 332 52.94 6e-119 L-lactate dehydrogenase A chain OS Trachemys scripta GN LDHA PE 2 SV 3
blastp_uniprot_sprot sp|P13491|LDHA_RABIT 37 348 + 312 Gaps:1 93.67 332 54.66 1e-118 L-lactate dehydrogenase A chain OS Oryctolagus cuniculus GN LDHA PE 1 SV 3
blastp_uniprot_sprot sp|Q9W7M6|LDHA_AMBME 37 348 + 312 Gaps:1 93.39 333 54.66 2e-118 L-lactate dehydrogenase A chain OS Ambystoma mexicanum GN LDHA PE 2 SV 1

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PRINTS 39 63 25 PR00086 none L-lactate dehydrogenase signature IPR001557
PRINTS 64 88 25 PR00086 none L-lactate dehydrogenase signature IPR001557
PRINTS 205 218 14 PR00086 none L-lactate dehydrogenase signature IPR001557
PRINTS 175 193 19 PR00086 none L-lactate dehydrogenase signature IPR001557
PRINTS 151 171 21 PR00086 none L-lactate dehydrogenase signature IPR001557
SUPERFAMILY 24 177 154 SSF51735 none none none
Gene3D 179 348 170 G3DSA:3.90.110.10 none none IPR015955
PANTHER 9 348 340 PTHR11540 none none IPR001557
TIGRFAM 42 341 300 TIGR01771 "KEGG:00010+1.1.1.27","KEGG:00270+1.1.1.27","KEGG:00620+1.1.1.27","KEGG:00640+1.1.1.27","MetaCyc:PWY-5481","MetaCyc:PWY-6901","UniPathway:UPA00554" L-LDH-NAD: L-lactate dehydrogenase IPR011304
Pfam 180 343 164 PF02866 none lactate/malate dehydrogenase, alpha/beta C-terminal domain IPR022383
SUPERFAMILY 178 348 171 SSF56327 none none IPR015955
ProSitePatterns 207 213 7 PS00064 "KEGG:00010+1.1.1.27","KEGG:00270+1.1.1.27","KEGG:00620+1.1.1.27","KEGG:00640+1.1.1.27","MetaCyc:PWY-5481","MetaCyc:PWY-6901","UniPathway:UPA00554" L-lactate dehydrogenase active site. IPR018177
Pfam 38 177 140 PF00056 none lactate/malate dehydrogenase, NAD binding domain IPR001236
Gene3D 23 178 156 G3DSA:3.40.50.720 none none IPR016040
PIRSF 34 350 317 PIRSF000102 none none IPR001557
PANTHER 9 348 340 PTHR11540:SF8 none none none
Hamap 37 349 313 MF_00488 "KEGG:00010+1.1.1.27","KEGG:00270+1.1.1.27","KEGG:00620+1.1.1.27","KEGG:00640+1.1.1.27","MetaCyc:PWY-5481","MetaCyc:PWY-6901","UniPathway:UPA00554" L-lactate dehydrogenase [ldh]. IPR011304

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting