Protein : Qrob_P0537520.2 Q. robur
Protein Identifier  ? Qrob_P0537520.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=6) K00162 - pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] Code Enzyme  EC:1.2.4.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 359  
Kegg Orthology  K00162
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2.
GO:0006086 acetyl-CoA biosynthetic process from pyruvate The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103498877 1 304 + 304 Gaps:9 84.14 372 85.30 0.0 pyruvate dehydrogenase E1 component subunit beta-1 mitochondrial
blastp_kegg lcl|pop:POPTR_0001s13350g 1 304 + 304 Gaps:9 87.43 358 85.62 0.0 POPTRDRAFT_829373 pyruvate dehydrogenase family protein
blastp_kegg lcl|csv:101220981 1 304 + 304 Gaps:9 84.14 372 84.98 0.0 pyruvate dehydrogenase E1 component subunit beta mitochondrial-like
blastp_kegg lcl|cam:101502417 1 304 + 304 Gaps:9 86.94 360 85.30 0.0 pyruvate dehydrogenase E1 component subunit beta mitochondrial-like
blastp_kegg lcl|mtr:MTR_7g005380 1 304 + 304 Gaps:9 86.70 361 84.98 0.0 Pyruvate dehydrogenase E1 component subunit beta
blastp_kegg lcl|rcu:RCOM_1437610 1 304 + 304 Gaps:9 85.05 368 84.66 0.0 pyruvate dehydrogenase putative (EC:1.2.4.1)
blastp_kegg lcl|sot:102602262 1 304 + 304 Gaps:9 83.02 377 83.07 0.0 pyruvate dehydrogenase E1 component subunit beta-1 mitochondrial-like
blastp_kegg lcl|pop:POPTR_0003s16480g 1 304 + 304 Gaps:9 83.91 373 84.35 0.0 POPTRDRAFT_414358 hypothetical protein
blastp_kegg lcl|tcc:TCM_008458 1 304 + 304 Gaps:9 85.29 367 83.39 0.0 Transketolase family protein isoform 1
blastp_kegg lcl|atr:s00016p00190930 1 304 + 304 Gaps:9 82.80 378 83.71 0.0 AMTR_s00016p00190930 hypothetical protein
blastp_pdb 3exi_B 1 304 + 304 Gaps:10 95.44 329 59.24 4e-129 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exh_H 1 304 + 304 Gaps:10 95.44 329 59.24 4e-129 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exh_F 1 304 + 304 Gaps:10 95.44 329 59.24 4e-129 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exh_D 1 304 + 304 Gaps:10 95.44 329 59.24 4e-129 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exh_B 1 304 + 304 Gaps:10 95.44 329 59.24 4e-129 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exg_6 1 304 + 304 Gaps:10 95.44 329 59.24 4e-129 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exg_4 1 304 + 304 Gaps:10 95.44 329 59.24 4e-129 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exg_2 1 304 + 304 Gaps:10 95.44 329 59.24 4e-129 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exg_Z 1 304 + 304 Gaps:10 95.44 329 59.24 4e-129 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exg_X 1 304 + 304 Gaps:10 95.44 329 59.24 4e-129 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_uniprot_sprot sp|Q6Z1G7|ODPB1_ORYSJ 1 304 + 304 Gaps:9 83.69 374 83.39 0.0 Pyruvate dehydrogenase E1 component subunit beta-1 mitochondrial OS Oryza sativa subsp. japonica GN Os08g0536000 PE 2 SV 1
blastp_uniprot_sprot sp|Q0J0H4|ODPB2_ORYSJ 1 304 + 304 Gaps:9 83.24 376 82.43 0.0 Pyruvate dehydrogenase E1 component subunit beta-2 mitochondrial OS Oryza sativa subsp. japonica GN Os09g0509200 PE 2 SV 1
blastp_uniprot_sprot sp|Q38799|ODPB1_ARATH 1 304 + 304 Gaps:9 86.23 363 81.15 0.0 Pyruvate dehydrogenase E1 component subunit beta-1 mitochondrial OS Arabidopsis thaliana GN PDH2 PE 1 SV 2
blastp_uniprot_sprot sp|P52904|ODPB_PEA 1 304 + 304 Gaps:9 87.19 359 82.11 0.0 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Pisum sativum PE 1 SV 1
blastp_uniprot_sprot sp|Q86HX0|ODPB_DICDI 1 303 + 303 Gaps:9 87.64 356 60.58 5e-134 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Dictyostelium discoideum GN pdhB PE 1 SV 1
blastp_uniprot_sprot sp|P32473|ODPB_YEAST 1 303 + 303 Gaps:12 85.52 366 63.58 1e-133 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN PDB1 PE 1 SV 2
blastp_uniprot_sprot sp|O44451|ODPB_CAEEL 1 302 + 302 Gaps:10 88.64 352 63.46 1e-133 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Caenorhabditis elegans GN pdhb-1 PE 1 SV 2
blastp_uniprot_sprot sp|P11966|ODPB_BOVIN 1 304 + 304 Gaps:10 87.47 359 61.46 4e-131 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Bos taurus GN PDHB PE 1 SV 2
blastp_uniprot_sprot sp|Q9D051|ODPB_MOUSE 1 304 + 304 Gaps:10 87.47 359 60.51 1e-130 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Mus musculus GN Pdhb PE 1 SV 1
blastp_uniprot_sprot sp|P49432|ODPB_RAT 1 304 + 304 Gaps:10 87.47 359 60.51 2e-130 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Rattus norvegicus GN Pdhb PE 1 SV 2

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 304 304 PTHR11624 none none none
Pfam 1 166 166 PF02779 none Transketolase, pyrimidine binding domain IPR005475
SUPERFAMILY 180 302 123 SSF52922 none none IPR009014
Pfam 185 303 119 PF02780 none Transketolase, C-terminal domain IPR005476
Gene3D 1 187 187 G3DSA:3.40.50.970 none none IPR029061
SUPERFAMILY 1 172 172 SSF52518 none none IPR029061
Phobius 329 358 30 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 1 304 304 PTHR11624:SF56 "KEGG:00010+1.2.4.1","KEGG:00020+1.2.4.1","KEGG:00620+1.2.4.1";signature_desc=PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT BETA, MITOCHONDRIAL (PTHR11624:SF56) none IPR027110
Gene3D 189 303 115 G3DSA:3.40.50.920 none none IPR009014
Phobius 1 307 307 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SMART 1 167 167 SM00861 none Transketolase, pyrimidine binding domain IPR005475
Phobius 308 328 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

1 Localization

Analysis Start End Length
TMHMM 306 328 22

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4

0 Targeting