Protein : Qrob_P0537510.2 Q. robur
Protein Identifier  ? Qrob_P0537510.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=6) K00162 - pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] Code Enzyme  EC:1.2.4.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 235  
Kegg Orthology  K00162
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2.
GO:0006086 acetyl-CoA biosynthetic process from pyruvate The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101220981 6 190 + 185 none 49.73 372 86.49 2e-110 pyruvate dehydrogenase E1 component subunit beta mitochondrial-like
blastp_kegg lcl|cmo:103498877 6 190 + 185 none 49.73 372 86.49 3e-110 pyruvate dehydrogenase E1 component subunit beta-1 mitochondrial
blastp_kegg lcl|cam:101502417 6 190 + 185 none 51.39 360 85.95 2e-109 pyruvate dehydrogenase E1 component subunit beta mitochondrial-like
blastp_kegg lcl|sot:102602262 6 190 + 185 none 49.07 377 84.32 4e-109 pyruvate dehydrogenase E1 component subunit beta-1 mitochondrial-like
blastp_kegg lcl|mtr:MTR_7g005380 6 190 + 185 none 51.25 361 85.95 7e-109 Pyruvate dehydrogenase E1 component subunit beta
blastp_kegg lcl|pop:POPTR_0001s13350g 6 190 + 185 none 51.68 358 85.95 1e-108 POPTRDRAFT_829373 pyruvate dehydrogenase family protein
blastp_kegg lcl|atr:s00016p00190930 6 190 + 185 none 48.94 378 85.41 2e-108 AMTR_s00016p00190930 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1437610 6 190 + 185 none 50.27 368 85.95 2e-108 pyruvate dehydrogenase putative (EC:1.2.4.1)
blastp_kegg lcl|pvu:PHAVU_008G000800g 6 190 + 185 none 51.10 362 85.41 2e-108 hypothetical protein
blastp_kegg lcl|gmx:100777306 6 190 + 185 none 51.39 360 85.41 2e-108 pyruvate dehydrogenase E1 component subunit beta mitochondrial-like
blastp_pdb 3exi_B 6 190 + 185 Gaps:1 56.53 329 58.06 6e-71 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exh_H 6 190 + 185 Gaps:1 56.53 329 58.06 6e-71 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exh_F 6 190 + 185 Gaps:1 56.53 329 58.06 6e-71 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exh_D 6 190 + 185 Gaps:1 56.53 329 58.06 6e-71 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exh_B 6 190 + 185 Gaps:1 56.53 329 58.06 6e-71 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exg_6 6 190 + 185 Gaps:1 56.53 329 58.06 6e-71 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exg_4 6 190 + 185 Gaps:1 56.53 329 58.06 6e-71 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exg_2 6 190 + 185 Gaps:1 56.53 329 58.06 6e-71 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exg_Z 6 190 + 185 Gaps:1 56.53 329 58.06 6e-71 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exg_X 6 190 + 185 Gaps:1 56.53 329 58.06 6e-71 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_uniprot_sprot sp|Q6Z1G7|ODPB1_ORYSJ 6 190 + 185 none 49.47 374 83.78 3e-107 Pyruvate dehydrogenase E1 component subunit beta-1 mitochondrial OS Oryza sativa subsp. japonica GN Os08g0536000 PE 2 SV 1
blastp_uniprot_sprot sp|P52904|ODPB_PEA 6 190 + 185 none 51.53 359 83.78 9e-107 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Pisum sativum PE 1 SV 1
blastp_uniprot_sprot sp|Q0J0H4|ODPB2_ORYSJ 6 190 + 185 none 49.20 376 82.16 9e-107 Pyruvate dehydrogenase E1 component subunit beta-2 mitochondrial OS Oryza sativa subsp. japonica GN Os09g0509200 PE 2 SV 1
blastp_uniprot_sprot sp|Q38799|ODPB1_ARATH 6 190 + 185 none 50.96 363 82.16 3e-105 Pyruvate dehydrogenase E1 component subunit beta-1 mitochondrial OS Arabidopsis thaliana GN PDH2 PE 1 SV 2
blastp_uniprot_sprot sp|Q86HX0|ODPB_DICDI 6 190 + 185 none 51.97 356 60.00 5e-74 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Dictyostelium discoideum GN pdhB PE 1 SV 1
blastp_uniprot_sprot sp|P32473|ODPB_YEAST 7 188 + 182 Gaps:3 50.00 366 64.48 3e-73 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN PDB1 PE 1 SV 2
blastp_uniprot_sprot sp|P11966|ODPB_BOVIN 6 190 + 185 Gaps:1 51.81 359 60.75 1e-71 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Bos taurus GN PDHB PE 1 SV 2
blastp_uniprot_sprot sp|P49432|ODPB_RAT 6 190 + 185 Gaps:1 51.81 359 59.14 4e-71 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Rattus norvegicus GN Pdhb PE 1 SV 2
blastp_uniprot_sprot sp|Q9D051|ODPB_MOUSE 6 190 + 185 Gaps:1 51.81 359 59.14 5e-71 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Mus musculus GN Pdhb PE 1 SV 1
blastp_uniprot_sprot sp|O44451|ODPB_CAEEL 7 188 + 182 Gaps:1 51.99 352 61.20 1e-70 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Caenorhabditis elegans GN pdhb-1 PE 1 SV 2

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 194 214 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 193 193 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 6 81 76 SSF52518 none none IPR029061
Gene3D 6 71 66 G3DSA:3.40.50.970 none none IPR029061
PANTHER 6 190 185 PTHR11624:SF56 "KEGG:00010+1.2.4.1","KEGG:00020+1.2.4.1","KEGG:00620+1.2.4.1";signature_desc=PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT BETA, MITOCHONDRIAL (PTHR11624:SF56) none IPR027110
Pfam 8 52 45 PF02779 none Transketolase, pyrimidine binding domain IPR005475
PANTHER 6 190 185 PTHR11624 none none none
Gene3D 72 189 118 G3DSA:3.40.50.920 none none IPR009014
Pfam 71 189 119 PF02780 none Transketolase, C-terminal domain IPR005476
Phobius 215 234 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 66 189 124 SSF52922 none none IPR009014

1 Localization

Analysis Start End Length
TMHMM 192 214 22

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4

0 Targeting