Protein : Qrob_P0536550.2 Q. robur
Protein Identifier  ? Qrob_P0536550.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) KOG1105//KOG1886 - Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 [Transcription]. // BAH domain proteins [Transcription]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1665  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0003682 chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000152mg 58 1664 + 1607 Gaps:38 98.88 1613 68.65 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_012003 13 1664 + 1652 Gaps:60 99.88 1630 68.55 0.0 BAH domain TFIIS helical bundle-like domain isoform 1
blastp_kegg lcl|pmum:103338311 14 1664 + 1651 Gaps:63 99.88 1636 68.05 0.0 microtubule-associated protein futsch
blastp_kegg lcl|vvi:100248456 14 1664 + 1651 Gaps:72 99.88 1631 67.40 0.0 uncharacterized LOC100248456
blastp_kegg lcl|pop:POPTR_0012s07900g 14 1660 + 1647 Gaps:52 99.82 1624 65.76 0.0 POPTRDRAFT_728989 hypothetical protein
blastp_kegg lcl|pop:POPTR_0015s08400g 14 1664 + 1651 Gaps:55 99.69 1633 65.97 0.0 POPTRDRAFT_251973 POPTRDRAFT_666430 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1511930 26 1664 + 1639 Gaps:51 99.09 1651 64.61 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1511900 18 1664 + 1647 Gaps:80 94.92 1712 64.98 0.0 DNA binding protein putative
blastp_kegg lcl|cic:CICLE_v10018474mg 19 1664 + 1646 Gaps:55 99.33 1634 64.39 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0015s08410g 18 1664 + 1647 Gaps:80 99.45 1642 63.87 0.0 POPTRDRAFT_733260 hypothetical protein
rpsblast_cdd gnl|CDD|72853 53 184 + 132 Gaps:3 92.47 146 54.07 4e-53 cd04713 BAH_plant_3 BAH or Bromo Adjacent Homology domain plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions..
rpsblast_cdd gnl|CDD|197726 61 175 + 115 Gaps:10 100.00 121 29.75 2e-18 smart00439 BAH Bromo adjacent homology domain.
rpsblast_cdd gnl|CDD|72847 59 169 + 111 Gaps:10 95.12 123 34.19 3e-14 cd04370 BAH BAH or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p) where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p) confirming the initial hypothesis that BAH plays a role in protein-protein interactions..
rpsblast_cdd gnl|CDD|197766 348 427 + 80 Gaps:5 100.00 75 38.67 6e-14 smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
rpsblast_cdd gnl|CDD|29145 350 426 + 77 Gaps:1 100.00 76 39.47 6e-12 cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS) similar to a domain found in elongin A and CRSP70 likely to be involved in transcription domain I from TFIIS interacts with RNA polymerase II holoenzyme.
rpsblast_cdd gnl|CDD|204037 376 425 + 50 none 98.04 51 46.00 2e-11 pfam08711 Med26 TFIIS helical bundle-like domain. Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species {1-2]. It is arranged into four different sections a core a head a tail and a kinase-activity part and the number of subunits within each of these is what varies with species. Overall Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription and a large form that does not interact strongly with pol II and does not directly activate transcription. Notably the 'small' and 'large' Mediator complexes differ in their subunit composition: the Med26 subunit preferentially associates with the small active complex whereas cdk8 cyclin C Med12 and Med13 associate with the large Mediator complex. This family includesthe C terminal region of a number of eukaryotic hypothetical proteins which are homologous to the Saccharomyces cerevisiae protein IWS1. IWS1 is known to be an Pol II transcription elongation factor and interacts with Spt6 and Spt5.
rpsblast_cdd gnl|CDD|72854 62 142 + 81 Gaps:3 66.12 121 38.75 1e-10 cd04714 BAH_BAHCC1 BAH or Bromo Adjacent Homology domain as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions..
rpsblast_cdd gnl|CDD|201789 61 171 + 111 Gaps:8 95.83 120 24.35 3e-10 pfam01426 BAH BAH domain. This domain has been called BAH (Bromo adjacent homology) domain and has also been called ELM1 and BAM (Bromo adjacent motif) domain. The function of this domain is unknown but may be involved in protein-protein interaction.
rpsblast_kog gnl|CDD|37097 53 484 + 432 Gaps:22 90.52 464 22.86 1e-71 KOG1886 KOG1886 KOG1886 BAH domain proteins [Transcription].
rpsblast_kog gnl|CDD|36321 366 485 + 120 Gaps:5 40.20 296 31.93 3e-07 KOG1105 KOG1105 KOG1105 Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 [Transcription].

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 612 939 328 PTHR15141:SF39 none none none
PANTHER 111 572 462 PTHR15141:SF39 none none none
SMART 60 175 116 SM00439 none Bromo adjacent homology domain IPR001025
Gene3D 329 438 110 G3DSA:1.20.930.10 none none IPR017923
Pfam 61 170 110 PF01426 none BAH domain IPR001025
SMART 348 427 80 SM00509 none Domain in the N-terminus of transcription elongation factor S-II (and elsewhere) IPR003617
ProSiteProfiles 60 175 116 PS51038 none BAH domain profile. IPR001025
ProSiteProfiles 351 428 78 PS51319 none TFIIS N-terminal domain profile. IPR017923
PANTHER 612 939 328 PTHR15141 none none none
SUPERFAMILY 330 439 110 SSF47676 none none IPR017923
PANTHER 1381 1662 282 PTHR15141:SF39 none none none
Pfam 376 425 50 PF08711 none TFIIS helical bundle-like domain IPR017923
PANTHER 1381 1662 282 PTHR15141 none none none
PANTHER 1048 1319 272 PTHR15141 none none none
PANTHER 111 572 462 PTHR15141 none none none
PANTHER 1048 1319 272 PTHR15141:SF39 none none none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting