Protein : Qrob_P0536540.2 Q. robur
Protein Identifier  ? Qrob_P0536540.2 Organism . Name  Quercus robur
Score  98.1 Score Type  egn
Protein Description  (M=2) PTHR15141//PTHR15141:SF39 - TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3 // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1709  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0003682 chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000152mg 109 1708 + 1600 Gaps:64 99.57 1613 66.69 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_012003 116 1708 + 1593 Gaps:73 97.30 1630 68.66 0.0 BAH domain TFIIS helical bundle-like domain isoform 1
blastp_kegg lcl|pmum:103338311 113 1708 + 1596 Gaps:88 97.68 1636 66.46 0.0 microtubule-associated protein futsch
blastp_kegg lcl|vvi:100248456 119 1708 + 1590 Gaps:62 97.61 1631 65.95 0.0 uncharacterized LOC100248456
blastp_kegg lcl|pop:POPTR_0015s08400g 113 1708 + 1596 Gaps:67 97.67 1633 65.45 0.0 POPTRDRAFT_251973 POPTRDRAFT_666430 hypothetical protein
blastp_kegg lcl|fve:101296103 113 1708 + 1596 Gaps:103 97.93 1594 65.09 0.0 uncharacterized protein LOC101296103
blastp_kegg lcl|pop:POPTR_0012s07900g 113 1703 + 1591 Gaps:64 97.72 1624 65.72 0.0 POPTRDRAFT_728989 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1511900 110 1708 + 1599 Gaps:75 92.87 1712 63.90 0.0 DNA binding protein putative
blastp_kegg lcl|cic:CICLE_v10018474mg 119 1708 + 1590 Gaps:69 97.25 1634 64.19 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1511930 71 1708 + 1638 Gaps:74 99.09 1651 62.41 0.0 hypothetical protein
rpsblast_cdd gnl|CDD|72853 114 246 + 133 Gaps:3 93.15 146 52.94 8e-52 cd04713 BAH_plant_3 BAH or Bromo Adjacent Homology domain plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions..
rpsblast_cdd gnl|CDD|197726 123 237 + 115 Gaps:10 100.00 121 30.58 4e-20 smart00439 BAH Bromo adjacent homology domain.
rpsblast_cdd gnl|CDD|72847 121 231 + 111 Gaps:10 95.12 123 34.19 2e-15 cd04370 BAH BAH or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p) where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p) confirming the initial hypothesis that BAH plays a role in protein-protein interactions..
rpsblast_cdd gnl|CDD|197766 410 489 + 80 Gaps:5 100.00 75 37.33 1e-12 smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
rpsblast_cdd gnl|CDD|72854 124 204 + 81 Gaps:3 66.12 121 38.75 2e-11 cd04714 BAH_BAHCC1 BAH or Bromo Adjacent Homology domain as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions..
rpsblast_cdd gnl|CDD|29145 412 488 + 77 Gaps:1 100.00 76 38.16 9e-11 cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS) similar to a domain found in elongin A and CRSP70 likely to be involved in transcription domain I from TFIIS interacts with RNA polymerase II holoenzyme.
rpsblast_cdd gnl|CDD|201789 123 233 + 111 Gaps:8 95.83 120 27.83 1e-10 pfam01426 BAH BAH domain. This domain has been called BAH (Bromo adjacent homology) domain and has also been called ELM1 and BAM (Bromo adjacent motif) domain. The function of this domain is unknown but may be involved in protein-protein interaction.
rpsblast_cdd gnl|CDD|204037 438 487 + 50 none 98.04 51 44.00 1e-10 pfam08711 Med26 TFIIS helical bundle-like domain. Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species {1-2]. It is arranged into four different sections a core a head a tail and a kinase-activity part and the number of subunits within each of these is what varies with species. Overall Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription and a large form that does not interact strongly with pol II and does not directly activate transcription. Notably the 'small' and 'large' Mediator complexes differ in their subunit composition: the Med26 subunit preferentially associates with the small active complex whereas cdk8 cyclin C Med12 and Med13 associate with the large Mediator complex. This family includesthe C terminal region of a number of eukaryotic hypothetical proteins which are homologous to the Saccharomyces cerevisiae protein IWS1. IWS1 is known to be an Pol II transcription elongation factor and interacts with Spt6 and Spt5.
rpsblast_cdd gnl|CDD|72860 114 227 + 114 Gaps:12 70.39 179 21.43 7e-07 cd04720 BAH_Orc1p_Yeast BAH or Bromo Adjacent Homology domain as present in Orc1p which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions..
rpsblast_kog gnl|CDD|37097 113 548 + 436 Gaps:23 91.16 464 24.59 1e-74 KOG1886 KOG1886 KOG1886 BAH domain proteins [Transcription].

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 1103 1131 29 Coil none none none
PANTHER 1080 1170 91 PTHR15141 none none none
PANTHER 173 636 464 PTHR15141 none none none
PANTHER 1187 1363 177 PTHR15141 none none none
PANTHER 672 995 324 PTHR15141 none none none
ProSiteProfiles 122 237 116 PS51038 none BAH domain profile. IPR001025
Gene3D 391 502 112 G3DSA:1.20.930.10 none none IPR017923
ProSiteProfiles 404 490 87 PS51319 none TFIIS N-terminal domain profile. IPR017923
PANTHER 1425 1708 284 PTHR15141 none none none
Pfam 123 232 110 PF01426 none BAH domain IPR001025
PANTHER 1080 1170 91 PTHR15141:SF39 none none none
PANTHER 173 636 464 PTHR15141:SF39 none none none
PANTHER 1425 1708 284 PTHR15141:SF39 none none none
PANTHER 1187 1363 177 PTHR15141:SF39 none none none
PANTHER 672 995 324 PTHR15141:SF39 none none none
SMART 122 237 116 SM00439 none Bromo adjacent homology domain IPR001025
SMART 410 489 80 SM00509 none Domain in the N-terminus of transcription elongation factor S-II (and elsewhere) IPR003617
SUPERFAMILY 392 501 110 SSF47676 none none IPR017923
Pfam 438 487 50 PF08711 none TFIIS helical bundle-like domain IPR017923

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting