Protein : Qrob_P0535820.2 Q. robur
Protein Identifier  ? Qrob_P0535820.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PTHR13878:SF14 - PREDICTED: SIMILAR TO L-GULONO-GAMMA-LACTONE OXIDASE Code Enzyme  EC:1.5.99.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 542  
Kegg Orthology  K00279
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0050660 flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity Catalysis of the reaction: UDP-N-acetylmuramate + NADP+ = UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine + NADPH + H+.
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
GO:0009690 cytokinin metabolic process The chemical reactions and pathways involving cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators.
GO:0019139 cytokinin dehydrogenase activity Catalysis of the reaction: N6-dimethylallyladenine + acceptor + H2O = adenine + 3-methylbut-2-enal + reduced electron acceptor.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0006s15720g 6 540 + 535 Gaps:11 99.05 529 71.37 0.0 POPTRDRAFT_762685 Cytokinin dehydrogenase 3 precursor family protein
blastp_kegg lcl|tcc:TCM_037648 1 541 + 541 Gaps:17 100.00 524 70.04 0.0 Cytokinin oxidase
blastp_kegg lcl|gmx:100787676 1 539 + 539 Gaps:11 98.69 535 68.18 0.0 CKX3 cytokinin dehydrogenase 3-like (EC:1.5.99.12)
blastp_kegg lcl|gmx:100804431 1 540 + 540 Gaps:10 99.82 543 67.90 0.0 cytokinin dehydrogenase 3-like
blastp_kegg lcl|cit:102612158 1 540 + 540 Gaps:16 99.81 525 71.18 0.0 cytokinin dehydrogenase 3-like
blastp_kegg lcl|cic:CICLE_v10007992mg 1 540 + 540 Gaps:16 99.81 525 70.99 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_003G136400g 1 541 + 541 Gaps:11 99.07 535 67.74 0.0 hypothetical protein
blastp_kegg lcl|gmx:100797928 5 540 + 536 Gaps:13 99.08 546 67.47 0.0 cytokinin dehydrogenase 3-like
blastp_kegg lcl|pvu:PHAVU_009G231700g 6 540 + 535 Gaps:12 98.52 539 67.42 0.0 hypothetical protein
blastp_kegg lcl|gmx:100782645 1 541 + 541 Gaps:11 99.07 535 67.74 0.0 cytokinin dehydrogenase 3-like
blastp_pdb 3dq0_A 48 539 + 492 Gaps:16 96.51 516 49.40 2e-158 mol:protein length:516 Cytokinin dehydrogenase 1
blastp_pdb 3c0p_A 48 539 + 492 Gaps:16 96.51 516 49.40 2e-158 mol:protein length:516 Cytokinin dehydrogenase 1
blastp_pdb 3bw7_A 48 539 + 492 Gaps:16 96.51 516 49.40 2e-158 mol:protein length:516 Cytokinin dehydrogenase 1
blastp_pdb 2qkn_A 48 539 + 492 Gaps:16 96.51 516 49.40 2e-158 mol:protein length:516 Cytokinin dehydrogenase 1
blastp_pdb 1w1s_A 48 539 + 492 Gaps:16 93.26 534 49.40 7e-158 mol:protein length:534 CYTOKININ DEHYDROGENASE
blastp_pdb 1w1r_A 48 539 + 492 Gaps:16 93.26 534 49.40 7e-158 mol:protein length:534 CYTOKININ DEHYDROGENASE 1
blastp_pdb 1w1q_A 48 539 + 492 Gaps:16 93.26 534 49.40 7e-158 mol:protein length:534 CYTOKININ DEHYDROGENASE 1
blastp_pdb 1w1o_A 48 539 + 492 Gaps:16 93.26 534 49.40 7e-158 mol:protein length:534 CYTOKININ DEHYDROGENASE 1
blastp_pdb 3kjm_A 48 539 + 492 Gaps:16 96.51 516 49.20 1e-157 mol:protein length:516 Cytokinin dehydrogenase 1
blastp_pdb 2qpm_A 48 539 + 492 Gaps:16 96.51 516 49.20 1e-157 mol:protein length:516 Cytokinin dehydrogenase 1
blastp_uniprot_sprot sp|Q9LTS3|CKX3_ARATH 39 538 + 500 Gaps:17 94.65 523 56.77 0.0 Cytokinin dehydrogenase 3 OS Arabidopsis thaliana GN CKX3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FUJ2|CKX4_ARATH 64 539 + 476 Gaps:21 91.03 524 52.20 1e-175 Cytokinin dehydrogenase 4 OS Arabidopsis thaliana GN CKX4 PE 1 SV 2
blastp_uniprot_sprot sp|Q6YW51|CKX6_ORYSJ 54 540 + 487 Gaps:9 92.22 527 52.06 3e-175 Cytokinin dehydrogenase 6 OS Oryza sativa subsp. japonica GN CKX6 PE 3 SV 1
blastp_uniprot_sprot sp|Q5Z620|CKX10_ORYSJ 15 538 + 524 Gaps:23 94.73 550 50.67 3e-175 Cytokinin dehydrogenase 10 OS Oryza sativa subsp. japonica GN CKX10 PE 3 SV 1
blastp_uniprot_sprot sp|Q6YW50|CKX7_ORYSJ 52 540 + 489 Gaps:12 92.56 524 50.93 1e-174 Cytokinin dehydrogenase 7 OS Oryza sativa subsp. japonica GN CKX7 PE 3 SV 1
blastp_uniprot_sprot sp|Q67YU0|CKX5_ARATH 69 540 + 472 Gaps:22 86.67 540 53.42 2e-172 Cytokinin dehydrogenase 5 OS Arabidopsis thaliana GN CKX5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FUJ3|CKX2_ARATH 58 538 + 481 Gaps:18 93.21 501 53.10 5e-171 Cytokinin dehydrogenase 2 OS Arabidopsis thaliana GN CKX2 PE 1 SV 2
blastp_uniprot_sprot sp|Q5ZAY9|CKX5_ORYSJ 11 540 + 530 Gaps:39 97.57 534 47.98 3e-161 Cytokinin dehydrogenase 5 OS Oryza sativa subsp. japonica GN CKX5 PE 2 SV 1
blastp_uniprot_sprot sp|Q75K78|CKX9_ORYSJ 62 539 + 478 Gaps:22 89.44 521 48.93 1e-156 Cytokinin dehydrogenase 9 OS Oryza sativa subsp. japonica GN CKX9 PE 2 SV 1
blastp_uniprot_sprot sp|O22213|CKX1_ARATH 63 538 + 476 Gaps:23 81.57 575 47.97 1e-156 Cytokinin dehydrogenase 1 OS Arabidopsis thaliana GN CKX1 PE 1 SV 1

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 26 26 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 48 541 494 PTHR13878 none none none
Gene3D 262 497 236 G3DSA:3.40.462.10 "KEGG:00908+1.5.99.12" none IPR016170
Pfam 260 538 279 PF09265 "KEGG:00908+1.5.99.12" Cytokinin dehydrogenase 1, FAD and cytokinin binding IPR015345
Phobius 11 22 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 27 234 208 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 80 228 149 PF01565 "KEGG:00520+1.3.1.98","KEGG:00550+1.3.1.98","MetaCyc:PWY-6386","MetaCyc:PWY-6387","UniPathway:UPA00219" FAD binding domain IPR006094
SUPERFAMILY 60 258 199 SSF56176 none none IPR016166
PANTHER 48 541 494 PTHR13878:SF14 none none none
Gene3D 166 258 93 G3DSA:3.30.465.10 none none IPR016169
Phobius 235 254 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 59 134 76 G3DSA:3.30.43.10 none none IPR016167
ProSiteProfiles 76 259 184 PS51387 none PCMH-type FAD-binding domain profile. IPR016166
ProSitePatterns 80 115 36 PS00862 none Oxygen oxidoreductases covalent FAD-binding site. IPR006093
SUPERFAMILY 260 539 280 SSF55103 none none IPR016164
Phobius 255 541 287 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 23 26 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 10 10 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none

2 Localization

Analysis Start End Length
TMHMM 7 26 19
SignalP_EUK 1 26 25

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting